Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC20.46■□□□□ 0.87
Cux1P53564 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC20.46■□□□□ 0.87
Cux1P53564 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cux1P53564 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Cux1P53564 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Cux1P53564 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Cux1P53564 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cux1P53564 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC20.46■□□□□ 0.87
Cux1P53564 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cux1P53564 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Cux1P53564 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cux1P53564 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cux1P53564 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cux1P53564 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Cux1P53564 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Cux1P53564 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cux1P53564 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Cux1P53564 Ewsr1-201ENSMUST00000063232 1320 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Cux1P53564 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cux1P53564 Gm12502-201ENSMUST00000120197 444 ntBASIC20.45■□□□□ 0.86
Cux1P53564 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Cux1P53564 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC20.45■□□□□ 0.86
Cux1P53564 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cux1P53564 Gm5597-201ENSMUST00000182353 1193 ntBASIC20.45■□□□□ 0.86
Cux1P53564 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cux1P53564 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cux1P53564 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cux1P53564 AC123857.2-201ENSMUST00000225756 1582 ntBASIC20.45■□□□□ 0.86
Cux1P53564 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Cux1P53564 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC20.45■□□□□ 0.86
Cux1P53564 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Cux1P53564 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cux1P53564 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cux1P53564 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cux1P53564 Tmub1-203ENSMUST00000115036 1455 ntTSL 5 BASIC20.45■□□□□ 0.86
Cux1P53564 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cux1P53564 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cux1P53564 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cux1P53564 Rbm3-ps-201ENSMUST00000121422 465 ntBASIC20.44■□□□□ 0.86
Cux1P53564 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Cux1P53564 AC154595.3-201ENSMUST00000224579 384 ntBASIC20.44■□□□□ 0.86
Cux1P53564 AC126253.1-202ENSMUST00000226732 835 ntBASIC20.44■□□□□ 0.86
Cux1P53564 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cux1P53564 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC20.44■□□□□ 0.86
Cux1P53564 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC20.44■□□□□ 0.86
Cux1P53564 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cux1P53564 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cux1P53564 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cux1P53564 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cux1P53564 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Cux1P53564 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cux1P53564 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cux1P53564 Gm14028-201ENSMUST00000117434 479 ntBASIC20.43■□□□□ 0.86
Cux1P53564 Gm7857-201ENSMUST00000117957 358 ntBASIC20.43■□□□□ 0.86
Cux1P53564 Gm13665-201ENSMUST00000120830 528 ntBASIC20.43■□□□□ 0.86
Cux1P53564 Gm8908-201ENSMUST00000121633 1024 ntBASIC20.43■□□□□ 0.86
Cux1P53564 Rhoc-204ENSMUST00000176347 583 ntTSL 5 BASIC20.43■□□□□ 0.86
Cux1P53564 Ak6-205ENSMUST00000190729 1184 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Cux1P53564 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cux1P53564 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cux1P53564 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cux1P53564 Dnd1-201ENSMUST00000061522 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cux1P53564 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cux1P53564 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cux1P53564 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cux1P53564 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cux1P53564 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cux1P53564 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cux1P53564 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC20.43■□□□□ 0.86
Cux1P53564 Gm3287-205ENSMUST00000228893 1332 ntBASIC20.43■□□□□ 0.86
Cux1P53564 Gm43399-201ENSMUST00000202546 2374 ntBASIC20.43■□□□□ 0.86
Cux1P53564 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Cux1P53564 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cux1P53564 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Cux1P53564 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
Cux1P53564 Gm14017-201ENSMUST00000121934 386 ntBASIC20.43■□□□□ 0.86
Cux1P53564 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC20.43■□□□□ 0.86
Cux1P53564 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Cux1P53564 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC20.43■□□□□ 0.86
Cux1P53564 Ube2a-202ENSMUST00000200835 911 ntTSL 5 BASIC20.43■□□□□ 0.86
Cux1P53564 Ube2a-209ENSMUST00000202991 715 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cux1P53564 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC20.42■□□□□ 0.86
Cux1P53564 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cux1P53564 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cux1P53564 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Cux1P53564 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cux1P53564 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cux1P53564 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cux1P53564 AC154725.1-201ENSMUST00000224826 1961 ntBASIC20.42■□□□□ 0.86
Cux1P53564 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Cux1P53564 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Cux1P53564 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cux1P53564 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cux1P53564 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cux1P53564 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cux1P53564 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC20.42■□□□□ 0.86
Cux1P53564 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cux1P53564 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cux1P53564 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cux1P53564 AC167013.2-201ENSMUST00000228520 2684 ntBASIC20.42■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms