Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Usp4P35123 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usp4P35123 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC14.21□□□□□ -0.13
Usp4P35123 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC14.21□□□□□ -0.13
Usp4P35123 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Usp4P35123 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usp4P35123 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Usp4P35123 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Usp4P35123 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC14.21□□□□□ -0.13
Usp4P35123 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usp4P35123 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC14.21□□□□□ -0.14
Usp4P35123 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC14.21□□□□□ -0.14
Usp4P35123 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Usp4P35123 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Usp4P35123 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC14.21□□□□□ -0.14
Usp4P35123 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Usp4P35123 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Usp4P35123 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC14.21□□□□□ -0.14
Usp4P35123 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
Usp4P35123 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
Usp4P35123 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usp4P35123 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Usp4P35123 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usp4P35123 AC117194.1-201ENSMUST00000224847 3002 ntBASIC14.2□□□□□ -0.14
Usp4P35123 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Usp4P35123 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usp4P35123 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC14.2□□□□□ -0.14
Usp4P35123 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usp4P35123 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Usp4P35123 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Usp4P35123 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Usp4P35123 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usp4P35123 Hells-201ENSMUST00000025965 5868 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usp4P35123 AC159196.2-201ENSMUST00000224082 1622 ntBASIC14.2□□□□□ -0.14
Usp4P35123 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Usp4P35123 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usp4P35123 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usp4P35123 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Usp4P35123 Gm13223-201ENSMUST00000118609 747 ntBASIC14.2□□□□□ -0.14
Usp4P35123 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC14.2□□□□□ -0.14
Usp4P35123 Gm12151-201ENSMUST00000121374 290 ntBASIC14.2□□□□□ -0.14
Usp4P35123 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usp4P35123 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC14.2□□□□□ -0.14
Usp4P35123 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Usp4P35123 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Usp4P35123 Mir7684-201ENSMUST00000183858 60 ntBASIC14.2□□□□□ -0.14
Usp4P35123 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Usp4P35123 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC14.2□□□□□ -0.14
Usp4P35123 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Usp4P35123 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usp4P35123 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usp4P35123 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Usp4P35123 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Usp4P35123 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usp4P35123 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usp4P35123 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usp4P35123 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Usp4P35123 Gm5385-201ENSMUST00000118988 1559 ntBASIC14.2□□□□□ -0.14
Usp4P35123 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usp4P35123 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usp4P35123 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usp4P35123 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Usp4P35123 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Usp4P35123 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usp4P35123 Gm44414-201ENSMUST00000203660 2109 ntBASIC14.2□□□□□ -0.14
Usp4P35123 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usp4P35123 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Usp4P35123 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Usp4P35123 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Usp4P35123 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Usp4P35123 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Usp4P35123 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Usp4P35123 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC14.19□□□□□ -0.14
Usp4P35123 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Usp4P35123 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Usp4P35123 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Usp4P35123 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Usp4P35123 AC124751.1-201ENSMUST00000222716 1408 ntBASIC14.19□□□□□ -0.14
Usp4P35123 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Usp4P35123 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Usp4P35123 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Usp4P35123 Gm27306-201ENSMUST00000183970 107 ntBASIC14.19□□□□□ -0.14
Usp4P35123 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Usp4P35123 AC149294.4-201ENSMUST00000227870 882 ntBASIC14.19□□□□□ -0.14
Usp4P35123 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Usp4P35123 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Usp4P35123 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Usp4P35123 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Usp4P35123 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Usp4P35123 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Usp4P35123 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Usp4P35123 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Usp4P35123 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Usp4P35123 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Usp4P35123 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Usp4P35123 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Usp4P35123 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Usp4P35123 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usp4P35123 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usp4P35123 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms