Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.66
Cdx1P18111 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Cdx1P18111 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Cdx1P18111 Gm38102-201ENSMUST00000192791 1935 ntBASIC10.96□□□□□ -0.66
Cdx1P18111 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Ffar1-201ENSMUST00000052700 4175 ntAPPRIS P1 BASIC10.95□□□□□ -0.66
Cdx1P18111 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Prkca-201ENSMUST00000059595 8409 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Mgll-201ENSMUST00000089449 3867 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Zfp862-ps-204ENSMUST00000204484 6065 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Nudt18-203ENSMUST00000228768 1578 ntBASIC10.95□□□□□ -0.66
Cdx1P18111 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Zfp108-202ENSMUST00000205982 2577 ntAPPRIS P2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC10.95□□□□□ -0.66
Cdx1P18111 Rpap1-203ENSMUST00000110793 5458 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
Cdx1P18111 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
Cdx1P18111 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Vmn1r198-203ENSMUST00000226909 6259 ntAPPRIS P2 BASIC10.95□□□□□ -0.66
Cdx1P18111 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC10.95□□□□□ -0.66
Cdx1P18111 Adprhl1-205ENSMUST00000204916 5228 ntTSL 5 BASIC10.95□□□□□ -0.66
Cdx1P18111 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Eps15l1-201ENSMUST00000163643 3129 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Fgf17-202ENSMUST00000227123 1336 ntBASIC10.95□□□□□ -0.66
Cdx1P18111 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Fen1-203ENSMUST00000142241 2152 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC10.95□□□□□ -0.66
Cdx1P18111 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC10.95□□□□□ -0.66
Cdx1P18111 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC10.95□□□□□ -0.66
Cdx1P18111 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Gm43474-201ENSMUST00000196415 774 ntBASIC10.95□□□□□ -0.66
Cdx1P18111 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC10.95□□□□□ -0.66
Cdx1P18111 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 AC124732.2-201ENSMUST00000221977 316 ntBASIC10.95□□□□□ -0.66
Cdx1P18111 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC10.95□□□□□ -0.66
Cdx1P18111 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Mettl13-201ENSMUST00000028017 4541 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC10.95□□□□□ -0.66
Cdx1P18111 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Matn2-203ENSMUST00000226766 3252 ntBASIC10.95□□□□□ -0.66
Cdx1P18111 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC10.95□□□□□ -0.66
Cdx1P18111 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC10.95□□□□□ -0.66
Cdx1P18111 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx1P18111 Pou2f2-203ENSMUST00000108415 7095 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cdx1P18111 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC10.94□□□□□ -0.66
Cdx1P18111 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cdx1P18111 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
Cdx1P18111 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cdx1P18111 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
Cdx1P18111 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
Cdx1P18111 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cdx1P18111 Chd7-201ENSMUST00000039267 9444 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
Cdx1P18111 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cdx1P18111 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cdx1P18111 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cdx1P18111 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cdx1P18111 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC10.94□□□□□ -0.66
Cdx1P18111 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cdx1P18111 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cdx1P18111 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Cdx1P18111 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC10.94□□□□□ -0.66
Cdx1P18111 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC10.94□□□□□ -0.66
Cdx1P18111 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cdx1P18111 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC10.94□□□□□ -0.66
Cdx1P18111 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC10.94□□□□□ -0.66
Cdx1P18111 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
Cdx1P18111 Gm20553-201ENSMUST00000204205 844 ntBASIC10.94□□□□□ -0.66
Cdx1P18111 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC10.94□□□□□ -0.66
Cdx1P18111 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC10.94□□□□□ -0.66
Cdx1P18111 AC131187.1-201ENSMUST00000224567 809 ntBASIC10.94□□□□□ -0.66
Cdx1P18111 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cdx1P18111 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC10.94□□□□□ -0.66
Cdx1P18111 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cdx1P18111 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC10.94□□□□□ -0.66
Cdx1P18111 Rbm4b-201ENSMUST00000036744 1783 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cdx1P18111 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cdx1P18111 Gm37411-201ENSMUST00000194180 2282 ntBASIC10.94□□□□□ -0.66
Cdx1P18111 Gm5608-201ENSMUST00000210253 2290 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Cdx1P18111 Rapgef3-205ENSMUST00000129223 3750 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Cdx1P18111 Vit-201ENSMUST00000024880 2720 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cdx1P18111 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cdx1P18111 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC10.94□□□□□ -0.66
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms