Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Chmp6P0C0A3 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Chmp6P0C0A3 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Chmp6P0C0A3 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Chmp6P0C0A3 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC14.76□□□□□ -0.05
Chmp6P0C0A3 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Chmp6P0C0A3 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Chmp6P0C0A3 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Chmp6P0C0A3 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Chmp6P0C0A3 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Chmp6P0C0A3 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Chmp6P0C0A3 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Chmp6P0C0A3 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Chmp6P0C0A3 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Chmp6P0C0A3 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Chmp6P0C0A3 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Crybg2-213ENSMUST00000227683 5578 ntAPPRIS ALT2 BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Gm12859-201ENSMUST00000117834 427 ntBASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Wdyhv1-206ENSMUST00000227142 786 ntBASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Chmp6P0C0A3 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Mir698-201ENSMUST00000102164 109 ntBASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Gm22189-201ENSMUST00000103822 86 ntBASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Gm6912-201ENSMUST00000117218 544 ntBASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Gm7063-201ENSMUST00000186840 981 ntBASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Gm18905-201ENSMUST00000205454 928 ntBASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Gm12626-201ENSMUST00000117339 1983 ntBASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Gm12623-201ENSMUST00000119849 1983 ntBASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Chmp6P0C0A3 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Sppl2a-201ENSMUST00000028844 5616 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Chmp6P0C0A3 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Chmp6P0C0A3 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Chmp6P0C0A3 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Chmp6P0C0A3 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Chmp6P0C0A3 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Chmp6P0C0A3 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 43.1 ms