Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn11aQ9R053 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Scn11aQ9R053 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
Scn11aQ9R053 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn11aQ9R053 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
Scn11aQ9R053 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn11aQ9R053 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn11aQ9R053 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC15.79■□□□□ 0.12
Scn11aQ9R053 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Scn11aQ9R053 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Scn11aQ9R053 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn11aQ9R053 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Scn11aQ9R053 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn11aQ9R053 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn11aQ9R053 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn11aQ9R053 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn11aQ9R053 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
Scn11aQ9R053 Gm12291-201ENSMUST00000121627 311 ntBASIC15.79■□□□□ 0.12
Scn11aQ9R053 Mogat1-201ENSMUST00000012331 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn11aQ9R053 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC15.79■□□□□ 0.12
Scn11aQ9R053 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC15.79■□□□□ 0.12
Scn11aQ9R053 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn11aQ9R053 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn11aQ9R053 Gm20482-202ENSMUST00000174729 825 ntBASIC15.79■□□□□ 0.12
Scn11aQ9R053 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn11aQ9R053 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn11aQ9R053 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn11aQ9R053 Gm6015-201ENSMUST00000217493 1586 ntBASIC15.79■□□□□ 0.12
Scn11aQ9R053 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
Scn11aQ9R053 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC15.78■□□□□ 0.12
Scn11aQ9R053 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn11aQ9R053 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Scn11aQ9R053 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
Scn11aQ9R053 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn11aQ9R053 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn11aQ9R053 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn11aQ9R053 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC15.78■□□□□ 0.12
Scn11aQ9R053 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn11aQ9R053 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn11aQ9R053 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn11aQ9R053 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn11aQ9R053 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn11aQ9R053 Pigp-205ENSMUST00000113917 805 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Scn11aQ9R053 Mocs2-203ENSMUST00000164737 745 ntTSL 3 BASIC15.78■□□□□ 0.12
Scn11aQ9R053 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC15.78■□□□□ 0.12
Scn11aQ9R053 Gm9061-201ENSMUST00000182707 1006 ntBASIC15.78■□□□□ 0.12
Scn11aQ9R053 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Scn11aQ9R053 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn11aQ9R053 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn11aQ9R053 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC15.78■□□□□ 0.12
Scn11aQ9R053 CT009713.10-201ENSMUST00000225013 1986 ntBASIC15.78■□□□□ 0.12
Scn11aQ9R053 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn11aQ9R053 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn11aQ9R053 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC15.78■□□□□ 0.12
Scn11aQ9R053 Efs-201ENSMUST00000022813 2705 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn11aQ9R053 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn11aQ9R053 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn11aQ9R053 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Scn11aQ9R053 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn11aQ9R053 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn11aQ9R053 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC15.78■□□□□ 0.12
Scn11aQ9R053 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Scn11aQ9R053 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn11aQ9R053 Gm44775-201ENSMUST00000207266 1456 ntBASIC15.78■□□□□ 0.12
Scn11aQ9R053 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
Scn11aQ9R053 Gm37912-201ENSMUST00000191895 3076 ntBASIC15.78■□□□□ 0.12
Scn11aQ9R053 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Scn11aQ9R053 Bnip3l-ps-201ENSMUST00000101577 657 ntBASIC15.77■□□□□ 0.12
Scn11aQ9R053 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Scn11aQ9R053 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC15.77■□□□□ 0.12
Scn11aQ9R053 Gm12201-201ENSMUST00000120657 1234 ntBASIC15.77■□□□□ 0.12
Scn11aQ9R053 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Scn11aQ9R053 Gm24990-201ENSMUST00000157406 323 ntBASIC15.77■□□□□ 0.12
Scn11aQ9R053 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
Scn11aQ9R053 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC15.77■□□□□ 0.12
Scn11aQ9R053 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC15.77■□□□□ 0.12
Scn11aQ9R053 Bnip3l-ps-202ENSMUST00000220709 1132 ntBASIC15.77■□□□□ 0.12
Scn11aQ9R053 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC15.77■□□□□ 0.12
Scn11aQ9R053 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
Scn11aQ9R053 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
Scn11aQ9R053 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC15.77■□□□□ 0.12
Scn11aQ9R053 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Scn11aQ9R053 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Scn11aQ9R053 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
Scn11aQ9R053 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Scn11aQ9R053 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Scn11aQ9R053 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
Scn11aQ9R053 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Scn11aQ9R053 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
Scn11aQ9R053 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Scn11aQ9R053 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC15.77■□□□□ 0.11
Scn11aQ9R053 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC15.77■□□□□ 0.11
Scn11aQ9R053 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Scn11aQ9R053 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Scn11aQ9R053 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
Scn11aQ9R053 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Scn11aQ9R053 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC15.77■□□□□ 0.11
Scn11aQ9R053 Gm4986-201ENSMUST00000119731 549 ntBASIC15.77■□□□□ 0.11
Scn11aQ9R053 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC15.77■□□□□ 0.11
Scn11aQ9R053 7530416G11Rik-201ENSMUST00000178942 1161 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms