Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC12.84□□□□□ -0.35
Use1Q9CQ56 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Use1Q9CQ56 Gm9924-202ENSMUST00000192760 2311 ntBASIC12.84□□□□□ -0.35
Use1Q9CQ56 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Use1Q9CQ56 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Use1Q9CQ56 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Use1Q9CQ56 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC12.84□□□□□ -0.35
Use1Q9CQ56 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Use1Q9CQ56 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Use1Q9CQ56 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
Use1Q9CQ56 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.35
Use1Q9CQ56 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC12.83□□□□□ -0.35
Use1Q9CQ56 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Use1Q9CQ56 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Use1Q9CQ56 Gm37795-201ENSMUST00000194216 2459 ntBASIC12.83□□□□□ -0.36
Use1Q9CQ56 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Use1Q9CQ56 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Use1Q9CQ56 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Use1Q9CQ56 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Use1Q9CQ56 Gm15460-201ENSMUST00000118147 391 ntBASIC12.83□□□□□ -0.36
Use1Q9CQ56 Mir1897-201ENSMUST00000122581 272 ntBASIC12.83□□□□□ -0.36
Use1Q9CQ56 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC12.83□□□□□ -0.36
Use1Q9CQ56 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Use1Q9CQ56 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC12.83□□□□□ -0.36
Use1Q9CQ56 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Use1Q9CQ56 Gm2213-201ENSMUST00000197485 688 ntBASIC12.83□□□□□ -0.36
Use1Q9CQ56 Gm7774-201ENSMUST00000200064 533 ntBASIC12.83□□□□□ -0.36
Use1Q9CQ56 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC12.83□□□□□ -0.36
Use1Q9CQ56 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Use1Q9CQ56 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Use1Q9CQ56 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Use1Q9CQ56 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Use1Q9CQ56 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Use1Q9CQ56 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Use1Q9CQ56 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Use1Q9CQ56 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Use1Q9CQ56 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Use1Q9CQ56 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Use1Q9CQ56 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Use1Q9CQ56 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Use1Q9CQ56 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Use1Q9CQ56 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Use1Q9CQ56 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Use1Q9CQ56 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Use1Q9CQ56 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Use1Q9CQ56 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Use1Q9CQ56 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Gm37644-201ENSMUST00000192190 2270 ntBASIC12.82□□□□□ -0.36
Use1Q9CQ56 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Gm14822-201ENSMUST00000122247 291 ntBASIC12.82□□□□□ -0.36
Use1Q9CQ56 Gm11594-201ENSMUST00000122313 162 ntBASIC12.82□□□□□ -0.36
Use1Q9CQ56 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC12.82□□□□□ -0.36
Use1Q9CQ56 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC12.82□□□□□ -0.36
Use1Q9CQ56 AC153872.1-201ENSMUST00000199539 128 ntBASIC12.82□□□□□ -0.36
Use1Q9CQ56 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Gm4971-201ENSMUST00000205991 1108 ntBASIC12.82□□□□□ -0.36
Use1Q9CQ56 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Gm5779-201ENSMUST00000218467 910 ntBASIC12.82□□□□□ -0.36
Use1Q9CQ56 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Gm8775-201ENSMUST00000170943 1327 ntBASIC12.82□□□□□ -0.36
Use1Q9CQ56 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Use1Q9CQ56 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Use1Q9CQ56 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Use1Q9CQ56 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Use1Q9CQ56 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Use1Q9CQ56 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Use1Q9CQ56 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Use1Q9CQ56 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Use1Q9CQ56 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Use1Q9CQ56 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Use1Q9CQ56 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC12.81□□□□□ -0.36
Use1Q9CQ56 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC12.81□□□□□ -0.36
Use1Q9CQ56 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms