Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sf3b1Q99NB9 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sf3b1Q99NB9 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sf3b1Q99NB9 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sf3b1Q99NB9 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
Sf3b1Q99NB9 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sf3b1Q99NB9 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sf3b1Q99NB9 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sf3b1Q99NB9 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Sf3b1Q99NB9 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sf3b1Q99NB9 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sf3b1Q99NB9 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sf3b1Q99NB9 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC14.37□□□□□ -0.11
Sf3b1Q99NB9 Gm11803-201ENSMUST00000119966 444 ntBASIC14.37□□□□□ -0.11
Sf3b1Q99NB9 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
Sf3b1Q99NB9 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC14.37□□□□□ -0.11
Sf3b1Q99NB9 Gm9728-201ENSMUST00000200197 1055 ntBASIC14.37□□□□□ -0.11
Sf3b1Q99NB9 AC122459.1-201ENSMUST00000228373 885 ntBASIC14.37□□□□□ -0.11
Sf3b1Q99NB9 Itm2b-204ENSMUST00000228637 783 ntBASIC14.37□□□□□ -0.11
Sf3b1Q99NB9 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sf3b1Q99NB9 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sf3b1Q99NB9 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sf3b1Q99NB9 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sf3b1Q99NB9 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sf3b1Q99NB9 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sf3b1Q99NB9 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sf3b1Q99NB9 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
Sf3b1Q99NB9 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sf3b1Q99NB9 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sf3b1Q99NB9 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC14.36□□□□□ -0.11
Sf3b1Q99NB9 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sf3b1Q99NB9 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC14.36□□□□□ -0.11
Sf3b1Q99NB9 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sf3b1Q99NB9 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Sf3b1Q99NB9 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sf3b1Q99NB9 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Sf3b1Q99NB9 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sf3b1Q99NB9 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Sf3b1Q99NB9 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Sf3b1Q99NB9 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Sf3b1Q99NB9 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Sf3b1Q99NB9 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Sf3b1Q99NB9 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Sf3b1Q99NB9 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC14.36□□□□□ -0.11
Sf3b1Q99NB9 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sf3b1Q99NB9 Mmp14-206ENSMUST00000225641 3238 ntBASIC14.36□□□□□ -0.11
Sf3b1Q99NB9 Gm29608-201ENSMUST00000190444 463 ntBASIC14.36□□□□□ -0.11
Sf3b1Q99NB9 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC14.36□□□□□ -0.11
Sf3b1Q99NB9 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Sf3b1Q99NB9 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sf3b1Q99NB9 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
Sf3b1Q99NB9 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sf3b1Q99NB9 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sf3b1Q99NB9 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC14.35□□□□□ -0.11
Sf3b1Q99NB9 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sf3b1Q99NB9 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sf3b1Q99NB9 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Sf3b1Q99NB9 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sf3b1Q99NB9 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sf3b1Q99NB9 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sf3b1Q99NB9 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC14.35□□□□□ -0.11
Sf3b1Q99NB9 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Sf3b1Q99NB9 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sf3b1Q99NB9 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sf3b1Q99NB9 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sf3b1Q99NB9 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sf3b1Q99NB9 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Sf3b1Q99NB9 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sf3b1Q99NB9 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sf3b1Q99NB9 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Sf3b1Q99NB9 Gm8213-201ENSMUST00000118191 441 ntBASIC14.35□□□□□ -0.11
Sf3b1Q99NB9 Gm5687-201ENSMUST00000118252 640 ntBASIC14.35□□□□□ -0.11
Sf3b1Q99NB9 Gm8062-201ENSMUST00000139696 444 ntBASIC14.35□□□□□ -0.11
Sf3b1Q99NB9 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Sf3b1Q99NB9 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sf3b1Q99NB9 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sf3b1Q99NB9 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC14.35□□□□□ -0.11
Sf3b1Q99NB9 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sf3b1Q99NB9 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sf3b1Q99NB9 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Sf3b1Q99NB9 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Sf3b1Q99NB9 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC14.34□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 37.2 ms