Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ushbp1Q8R370 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ushbp1Q8R370 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ushbp1Q8R370 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ushbp1Q8R370 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ushbp1Q8R370 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Ushbp1Q8R370 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Ushbp1Q8R370 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ushbp1Q8R370 AC139054.1-201ENSMUST00000226898 1598 ntBASIC15.21■□□□□ 0.03
Ushbp1Q8R370 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ushbp1Q8R370 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ushbp1Q8R370 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Ushbp1Q8R370 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ushbp1Q8R370 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ushbp1Q8R370 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ushbp1Q8R370 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC15.21■□□□□ 0.03
Ushbp1Q8R370 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC15.21■□□□□ 0.03
Ushbp1Q8R370 Gm27892-201ENSMUST00000185017 106 ntBASIC15.21■□□□□ 0.03
Ushbp1Q8R370 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC15.21■□□□□ 0.03
Ushbp1Q8R370 AY702102-202ENSMUST00000194651 1173 ntBASIC15.21■□□□□ 0.03
Ushbp1Q8R370 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC15.21■□□□□ 0.03
Ushbp1Q8R370 AC162801.1-201ENSMUST00000220612 198 ntBASIC15.21■□□□□ 0.03
Ushbp1Q8R370 CT030657.3-201ENSMUST00000222707 1200 ntBASIC15.21■□□□□ 0.03
Ushbp1Q8R370 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Ushbp1Q8R370 Serinc5-201ENSMUST00000049488 5366 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ushbp1Q8R370 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ushbp1Q8R370 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ushbp1Q8R370 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
Ushbp1Q8R370 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ushbp1Q8R370 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC15.21■□□□□ 0.03
Ushbp1Q8R370 Gm14371-201ENSMUST00000138925 1518 ntBASIC15.21■□□□□ 0.03
Ushbp1Q8R370 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Ushbp1Q8R370 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Ushbp1Q8R370 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Ushbp1Q8R370 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Ushbp1Q8R370 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Ushbp1Q8R370 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Ushbp1Q8R370 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC15.2■□□□□ 0.02
Ushbp1Q8R370 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 AC131997.1-201ENSMUST00000228611 1229 ntBASIC15.2■□□□□ 0.02
Ushbp1Q8R370 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ushbp1Q8R370 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Gm6198-201ENSMUST00000191337 2929 ntBASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Gm4984-201ENSMUST00000115987 360 ntBASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC15.19■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms