Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp47Q8BY87 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp47Q8BY87 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp47Q8BY87 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Usp47Q8BY87 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Usp47Q8BY87 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp47Q8BY87 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp47Q8BY87 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp47Q8BY87 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp47Q8BY87 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp47Q8BY87 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp47Q8BY87 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC19.04■□□□□ 0.64
Usp47Q8BY87 Gm16202-201ENSMUST00000117532 544 ntBASIC19.04■□□□□ 0.64
Usp47Q8BY87 Gm11978-201ENSMUST00000122315 466 ntBASIC19.04■□□□□ 0.64
Usp47Q8BY87 AC166349.1-201ENSMUST00000220866 695 ntBASIC19.04■□□□□ 0.64
Usp47Q8BY87 AC154595.3-201ENSMUST00000224579 384 ntBASIC19.04■□□□□ 0.64
Usp47Q8BY87 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp47Q8BY87 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC19.04■□□□□ 0.64
Usp47Q8BY87 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Usp47Q8BY87 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Usp47Q8BY87 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp47Q8BY87 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
Usp47Q8BY87 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp47Q8BY87 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp47Q8BY87 Gm28386-201ENSMUST00000189147 1849 ntBASIC19.03■□□□□ 0.64
Usp47Q8BY87 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC19.03■□□□□ 0.64
Usp47Q8BY87 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp47Q8BY87 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC19.03■□□□□ 0.64
Usp47Q8BY87 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
Usp47Q8BY87 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
Usp47Q8BY87 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Usp47Q8BY87 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp47Q8BY87 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp47Q8BY87 Gm43134-201ENSMUST00000199434 1886 ntBASIC19.03■□□□□ 0.64
Usp47Q8BY87 Gm30238-201ENSMUST00000195528 2603 ntBASIC19.03■□□□□ 0.64
Usp47Q8BY87 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp47Q8BY87 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC19.03■□□□□ 0.64
Usp47Q8BY87 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC19.03■□□□□ 0.64
Usp47Q8BY87 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Usp47Q8BY87 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC19.03■□□□□ 0.64
Usp47Q8BY87 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp47Q8BY87 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC19.03■□□□□ 0.64
Usp47Q8BY87 Gm37497-201ENSMUST00000195830 798 ntBASIC19.03■□□□□ 0.64
Usp47Q8BY87 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC19.03■□□□□ 0.64
Usp47Q8BY87 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp47Q8BY87 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp47Q8BY87 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
Usp47Q8BY87 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC19.03■□□□□ 0.64
Usp47Q8BY87 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Usp47Q8BY87 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp47Q8BY87 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp47Q8BY87 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Usp47Q8BY87 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC19.03■□□□□ 0.64
Usp47Q8BY87 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Usp47Q8BY87 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Usp47Q8BY87 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Usp47Q8BY87 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
Usp47Q8BY87 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Usp47Q8BY87 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Usp47Q8BY87 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Usp47Q8BY87 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
Usp47Q8BY87 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Usp47Q8BY87 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Usp47Q8BY87 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Usp47Q8BY87 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Usp47Q8BY87 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Usp47Q8BY87 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Usp47Q8BY87 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
Usp47Q8BY87 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
Usp47Q8BY87 Gm13369-201ENSMUST00000119442 987 ntBASIC19.02■□□□□ 0.64
Usp47Q8BY87 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC19.02■□□□□ 0.64
Usp47Q8BY87 Gm7029-201ENSMUST00000173226 450 ntBASIC19.02■□□□□ 0.64
Usp47Q8BY87 Gm27731-201ENSMUST00000185192 107 ntBASIC19.02■□□□□ 0.64
Usp47Q8BY87 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC19.02■□□□□ 0.64
Usp47Q8BY87 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC19.02■□□□□ 0.64
Usp47Q8BY87 AC173210.1-201ENSMUST00000222341 1131 ntBASIC19.02■□□□□ 0.64
Usp47Q8BY87 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Usp47Q8BY87 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Usp47Q8BY87 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
Usp47Q8BY87 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Usp47Q8BY87 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
Usp47Q8BY87 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
Usp47Q8BY87 Gm45684-201ENSMUST00000210244 1571 ntBASIC19.01■□□□□ 0.63
Usp47Q8BY87 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Usp47Q8BY87 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Usp47Q8BY87 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC19.01■□□□□ 0.63
Usp47Q8BY87 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Usp47Q8BY87 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Usp47Q8BY87 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Usp47Q8BY87 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Usp47Q8BY87 Gm23931-201ENSMUST00000103842 109 ntBASIC19.01■□□□□ 0.63
Usp47Q8BY87 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Usp47Q8BY87 Gm6161-201ENSMUST00000121942 1102 ntBASIC19.01■□□□□ 0.63
Usp47Q8BY87 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC19.01■□□□□ 0.63
Usp47Q8BY87 Snora78-201ENSMUST00000158630 128 ntBASIC19.01■□□□□ 0.63
Usp47Q8BY87 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
Usp47Q8BY87 Gm6254-201ENSMUST00000168178 1072 ntBASIC19.01■□□□□ 0.63
Usp47Q8BY87 Gm6153-201ENSMUST00000172004 1058 ntBASIC19.01■□□□□ 0.63
Usp47Q8BY87 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Usp47Q8BY87 Gm27682-201ENSMUST00000183930 110 ntBASIC19.01■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms