Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim56Q80VI1 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim56Q80VI1 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim56Q80VI1 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim56Q80VI1 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim56Q80VI1 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Trim56Q80VI1 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim56Q80VI1 Gm10040-201ENSMUST00000080726 1662 ntBASIC15.98■□□□□ 0.15
Trim56Q80VI1 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim56Q80VI1 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim56Q80VI1 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim56Q80VI1 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim56Q80VI1 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim56Q80VI1 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Trim56Q80VI1 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim56Q80VI1 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Trim56Q80VI1 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim56Q80VI1 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Gm9755-201ENSMUST00000032981 1356 ntBASIC15.97■□□□□ 0.15
Trim56Q80VI1 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Tmed9-203ENSMUST00000224741 1450 ntBASIC15.97■□□□□ 0.15
Trim56Q80VI1 Ankra2-208ENSMUST00000226100 1476 ntBASIC15.97■□□□□ 0.15
Trim56Q80VI1 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim56Q80VI1 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trim56Q80VI1 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
Trim56Q80VI1 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trim56Q80VI1 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trim56Q80VI1 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC15.96■□□□□ 0.15
Trim56Q80VI1 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
Trim56Q80VI1 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trim56Q80VI1 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trim56Q80VI1 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Trim56Q80VI1 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trim56Q80VI1 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
Trim56Q80VI1 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trim56Q80VI1 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trim56Q80VI1 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
Trim56Q80VI1 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trim56Q80VI1 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Trim56Q80VI1 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trim56Q80VI1 Gm5687-201ENSMUST00000118252 640 ntBASIC15.96■□□□□ 0.15
Trim56Q80VI1 Gm11400-201ENSMUST00000120853 1214 ntBASIC15.96■□□□□ 0.15
Trim56Q80VI1 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC15.96■□□□□ 0.15
Trim56Q80VI1 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trim56Q80VI1 Gm27892-201ENSMUST00000185017 106 ntBASIC15.96■□□□□ 0.15
Trim56Q80VI1 Gm33460-201ENSMUST00000212286 536 ntTSL 5 BASIC15.96■□□□□ 0.15
Trim56Q80VI1 Gm8598-201ENSMUST00000221184 836 ntBASIC15.96■□□□□ 0.15
Trim56Q80VI1 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trim56Q80VI1 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trim56Q80VI1 Gm5356-201ENSMUST00000093326 615 ntBASIC15.96■□□□□ 0.15
Trim56Q80VI1 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC15.96■□□□□ 0.15
Trim56Q80VI1 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Trim56Q80VI1 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trim56Q80VI1 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trim56Q80VI1 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trim56Q80VI1 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trim56Q80VI1 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trim56Q80VI1 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.14
Trim56Q80VI1 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Trim56Q80VI1 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Trim56Q80VI1 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Trim56Q80VI1 Gm11405-201ENSMUST00000118689 1556 ntBASIC15.96■□□□□ 0.14
Trim56Q80VI1 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
Trim56Q80VI1 Gm8131-201ENSMUST00000213783 1570 ntBASIC15.96■□□□□ 0.14
Trim56Q80VI1 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
Trim56Q80VI1 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trim56Q80VI1 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
Trim56Q80VI1 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trim56Q80VI1 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
Trim56Q80VI1 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trim56Q80VI1 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC15.95■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 77 ms