Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Gm20632-201ENSMUST00000176760 2427 ntBASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Gm6912-201ENSMUST00000117218 544 ntBASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Gm24420-201ENSMUST00000176676 59 ntBASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Gm27989-201ENSMUST00000184721 107 ntBASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Dab2ip-206ENSMUST00000112987 6287 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Gm42690-201ENSMUST00000197921 1836 ntBASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Gm38346-201ENSMUST00000192379 2639 ntBASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Trav5d-4Q5R1F6 Gm6198-201ENSMUST00000191337 2929 ntBASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Gm43364-201ENSMUST00000196046 3274 ntBASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 AC124751.1-201ENSMUST00000222716 1408 ntBASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Gm38197-201ENSMUST00000192320 2122 ntBASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Trav5d-4Q5R1F6 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 48.7 ms