Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Gm26464-201ENSMUST00000157094 305 ntBASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC14.52□□□□□ -0.09
Upf3bQ3ULL6 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Disp1-205ENSMUST00000195372 4901 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Gm15376-201ENSMUST00000122258 783 ntBASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Mir6392-201ENSMUST00000184924 108 ntBASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Gm5069-202ENSMUST00000192714 1011 ntBASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Gm11405-201ENSMUST00000118689 1556 ntBASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Upf3bQ3ULL6 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Gm12341-201ENSMUST00000119724 503 ntBASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Gm18624-201ENSMUST00000220966 658 ntBASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Gm15823-201ENSMUST00000064305 670 ntBASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Gm5161-201ENSMUST00000075243 853 ntBASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Gm24447-201ENSMUST00000083977 338 ntBASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms