Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lig3P97386 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lig3P97386 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Lig3P97386 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lig3P97386 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC14.84□□□□□ -0.03
Lig3P97386 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lig3P97386 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lig3P97386 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Lig3P97386 Gm20632-201ENSMUST00000176760 2427 ntBASIC14.84□□□□□ -0.03
Lig3P97386 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lig3P97386 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Lig3P97386 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lig3P97386 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Lig3P97386 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lig3P97386 Gm13226-201ENSMUST00000117838 404 ntBASIC14.84□□□□□ -0.03
Lig3P97386 Gm8062-201ENSMUST00000139696 444 ntBASIC14.84□□□□□ -0.03
Lig3P97386 Gm17420-201ENSMUST00000164753 153 ntBASIC14.84□□□□□ -0.03
Lig3P97386 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Lig3P97386 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC14.84□□□□□ -0.03
Lig3P97386 AC139580.1-202ENSMUST00000223574 928 ntBASIC14.84□□□□□ -0.03
Lig3P97386 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
Lig3P97386 Mir125a-201ENSMUST00000083545 68 ntBASIC14.84□□□□□ -0.03
Lig3P97386 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Lig3P97386 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lig3P97386 Fh1-201ENSMUST00000027810 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lig3P97386 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lig3P97386 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lig3P97386 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC14.84□□□□□ -0.03
Lig3P97386 Cacna1g-203ENSMUST00000103166 8104 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Lig3P97386 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lig3P97386 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
Lig3P97386 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
Lig3P97386 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Lig3P97386 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Lig3P97386 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Lig3P97386 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Lig3P97386 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.03
Lig3P97386 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Lig3P97386 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC14.83□□□□□ -0.04
Lig3P97386 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC14.83□□□□□ -0.04
Lig3P97386 Gm12585-201ENSMUST00000117307 290 ntBASIC14.83□□□□□ -0.04
Lig3P97386 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Lig3P97386 Snora78-201ENSMUST00000158630 128 ntBASIC14.83□□□□□ -0.04
Lig3P97386 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Lig3P97386 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC14.83□□□□□ -0.04
Lig3P97386 AC159896.2-201ENSMUST00000214753 269 ntBASIC14.83□□□□□ -0.04
Lig3P97386 AC154319.1-201ENSMUST00000216330 312 ntBASIC14.83□□□□□ -0.04
Lig3P97386 AL589735.1-201ENSMUST00000224353 270 ntBASIC14.83□□□□□ -0.04
Lig3P97386 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC14.83□□□□□ -0.04
Lig3P97386 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
Lig3P97386 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Lig3P97386 Grk6-205ENSMUST00000224653 2976 ntBASIC14.83□□□□□ -0.04
Lig3P97386 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Lig3P97386 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
Lig3P97386 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Lig3P97386 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Lig3P97386 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig3P97386 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig3P97386 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig3P97386 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig3P97386 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig3P97386 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig3P97386 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig3P97386 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig3P97386 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig3P97386 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig3P97386 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC14.82□□□□□ -0.04
Lig3P97386 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Lig3P97386 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Lig3P97386 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Lig3P97386 Gm15198-201ENSMUST00000117283 177 ntBASIC14.82□□□□□ -0.04
Lig3P97386 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Lig3P97386 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC14.82□□□□□ -0.04
Lig3P97386 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC14.82□□□□□ -0.04
Lig3P97386 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC14.82□□□□□ -0.04
Lig3P97386 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC14.82□□□□□ -0.04
Lig3P97386 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig3P97386 Mir7654-201ENSMUST00000185082 70 ntBASIC14.82□□□□□ -0.04
Lig3P97386 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC14.82□□□□□ -0.04
Lig3P97386 Gm17794-201ENSMUST00000220252 955 ntBASIC14.82□□□□□ -0.04
Lig3P97386 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Lig3P97386 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig3P97386 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig3P97386 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC14.82□□□□□ -0.04
Lig3P97386 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lig3P97386 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC14.82□□□□□ -0.04
Lig3P97386 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC14.82□□□□□ -0.04
Lig3P97386 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Lig3P97386 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Lig3P97386 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC14.82□□□□□ -0.04
Lig3P97386 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Lig3P97386 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Lig3P97386 Gm2420-202ENSMUST00000202224 2249 ntBASIC14.81□□□□□ -0.04
Lig3P97386 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Lig3P97386 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Lig3P97386 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
Lig3P97386 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Lig3P97386 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC14.81□□□□□ -0.04
Lig3P97386 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Lig3P97386 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms