Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Lire1P11260 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Lire1P11260 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
Lire1P11260 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Lire1P11260 Gm27920-201ENSMUST00000183953 96 ntBASIC12.93□□□□□ -0.34
Lire1P11260 Gm27838-201ENSMUST00000184829 128 ntBASIC12.93□□□□□ -0.34
Lire1P11260 Gm9063-201ENSMUST00000223299 582 ntBASIC12.93□□□□□ -0.34
Lire1P11260 Rbfox2-208ENSMUST00000227930 1218 ntBASIC12.93□□□□□ -0.34
Lire1P11260 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lire1P11260 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lire1P11260 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC12.93□□□□□ -0.34
Lire1P11260 Rpap1-203ENSMUST00000110793 5458 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Lire1P11260 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lire1P11260 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lire1P11260 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Lire1P11260 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lire1P11260 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lire1P11260 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lire1P11260 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Lire1P11260 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Lire1P11260 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
Lire1P11260 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lire1P11260 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lire1P11260 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Lire1P11260 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Lire1P11260 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Lire1P11260 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC12.93□□□□□ -0.34
Lire1P11260 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC12.93□□□□□ -0.34
Lire1P11260 Brdt-201ENSMUST00000031215 4745 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lire1P11260 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lire1P11260 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lire1P11260 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lire1P11260 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Lire1P11260 Fbln7-202ENSMUST00000110324 3228 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Lire1P11260 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
Lire1P11260 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC12.92□□□□□ -0.34
Lire1P11260 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lire1P11260 Mog-201ENSMUST00000102665 1704 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lire1P11260 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lire1P11260 Gm13015-201ENSMUST00000118674 204 ntBASIC12.92□□□□□ -0.34
Lire1P11260 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC12.92□□□□□ -0.34
Lire1P11260 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC12.92□□□□□ -0.34
Lire1P11260 Ddx27-205ENSMUST00000150571 2151 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Lire1P11260 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Lire1P11260 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC12.92□□□□□ -0.34
Lire1P11260 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Lire1P11260 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Lire1P11260 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lire1P11260 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lire1P11260 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC12.92□□□□□ -0.34
Lire1P11260 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lire1P11260 Lamc3-201ENSMUST00000028187 5871 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lire1P11260 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lire1P11260 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lire1P11260 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Lire1P11260 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lire1P11260 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lire1P11260 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lire1P11260 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC12.92□□□□□ -0.34
Lire1P11260 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC12.92□□□□□ -0.34
Lire1P11260 Grk6-205ENSMUST00000224653 2976 ntBASIC12.92□□□□□ -0.34
Lire1P11260 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lire1P11260 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lire1P11260 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lire1P11260 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Lire1P11260 Gm45532-201ENSMUST00000210342 3620 ntBASIC12.92□□□□□ -0.34
Lire1P11260 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lire1P11260 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lire1P11260 Sgk1-203ENSMUST00000100036 2476 ntTSL 5 BASIC12.91□□□□□ -0.34
Lire1P11260 Sgk1-201ENSMUST00000020145 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lire1P11260 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lire1P11260 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lire1P11260 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lire1P11260 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC12.91□□□□□ -0.34
Lire1P11260 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Lire1P11260 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lire1P11260 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Lire1P11260 Osbpl7-201ENSMUST00000090020 3771 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lire1P11260 Gm15271-201ENSMUST00000134627 2110 ntTSL 5 BASIC12.91□□□□□ -0.34
Lire1P11260 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Lire1P11260 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lire1P11260 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lire1P11260 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lire1P11260 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Lire1P11260 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Lire1P11260 Flrt1-201ENSMUST00000113383 5859 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lire1P11260 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC12.91□□□□□ -0.34
Lire1P11260 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC12.91□□□□□ -0.34
Lire1P11260 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC12.91□□□□□ -0.34
Lire1P11260 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC12.91□□□□□ -0.34
Lire1P11260 Gm15483-201ENSMUST00000120338 456 ntBASIC12.91□□□□□ -0.34
Lire1P11260 Gm14719-201ENSMUST00000121891 340 ntBASIC12.91□□□□□ -0.34
Lire1P11260 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC12.91□□□□□ -0.34
Lire1P11260 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC12.91□□□□□ -0.34
Lire1P11260 Gm18766-201ENSMUST00000189811 808 ntBASIC12.91□□□□□ -0.34
Lire1P11260 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC12.91□□□□□ -0.34
Lire1P11260 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Lire1P11260 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Lire1P11260 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lire1P11260 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 48 ms