Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Med8-201ENSMUST00000019229 1145 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Scn4aQ9ER60 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Scn4aQ9ER60 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC18.02■□□□□ 0.47
Scn4aQ9ER60 Fam170a-201ENSMUST00000039121 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Scn4aQ9ER60 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Scn4aQ9ER60 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Scn4aQ9ER60 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Scn4aQ9ER60 Eno3-206ENSMUST00000170716 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Scn4aQ9ER60 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Scn4aQ9ER60 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Scn4aQ9ER60 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Scn4aQ9ER60 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Scn4aQ9ER60 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Scn4aQ9ER60 Ccdc60-202ENSMUST00000086483 2168 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Scn4aQ9ER60 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC18.01■□□□□ 0.47
Scn4aQ9ER60 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Scn4aQ9ER60 Mapkapk5-203ENSMUST00000111782 969 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Scn4aQ9ER60 Gm15856-201ENSMUST00000124853 1162 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Scn4aQ9ER60 BC016548-202ENSMUST00000153797 805 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Scn4aQ9ER60 Gm25604-201ENSMUST00000158359 133 ntBASIC18.01■□□□□ 0.47
Scn4aQ9ER60 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Scn4aQ9ER60 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Scn4aQ9ER60 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Scn4aQ9ER60 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Scn4aQ9ER60 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Scn4aQ9ER60 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Scn4aQ9ER60 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Scn4aQ9ER60 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Scn4aQ9ER60 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC18.01■□□□□ 0.47
Scn4aQ9ER60 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Scn4aQ9ER60 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Scn4aQ9ER60 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Scn4aQ9ER60 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Scn4aQ9ER60 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Scn4aQ9ER60 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Scn4aQ9ER60 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Scn4aQ9ER60 Gm14999-201ENSMUST00000121039 624 ntBASIC18■□□□□ 0.47
Scn4aQ9ER60 Gm6161-201ENSMUST00000121942 1102 ntBASIC18■□□□□ 0.47
Scn4aQ9ER60 Gm25881-201ENSMUST00000157783 103 ntBASIC18■□□□□ 0.47
Scn4aQ9ER60 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Scn4aQ9ER60 Gm6153-201ENSMUST00000172004 1058 ntBASIC18■□□□□ 0.47
Scn4aQ9ER60 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC18■□□□□ 0.47
Scn4aQ9ER60 Gm5852-201ENSMUST00000194119 1021 ntBASIC18■□□□□ 0.47
Scn4aQ9ER60 Gm5542-201ENSMUST00000195485 1089 ntBASIC18■□□□□ 0.47
Scn4aQ9ER60 Gm5641-202ENSMUST00000198699 1080 ntBASIC18■□□□□ 0.47
Scn4aQ9ER60 Gm4482-201ENSMUST00000200876 742 ntBASIC18■□□□□ 0.47
Scn4aQ9ER60 Gm19091-201ENSMUST00000208120 978 ntBASIC18■□□□□ 0.47
Scn4aQ9ER60 AC166341.2-201ENSMUST00000220571 120 ntBASIC18■□□□□ 0.47
Scn4aQ9ER60 Lst1-201ENSMUST00000097336 415 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Scn4aQ9ER60 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Scn4aQ9ER60 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC18■□□□□ 0.47
Scn4aQ9ER60 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Scn4aQ9ER60 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC18■□□□□ 0.47
Scn4aQ9ER60 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Scn4aQ9ER60 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Scn4aQ9ER60 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Scn4aQ9ER60 Gm15978-201ENSMUST00000161043 738 ntTSL 1 (best) BASIC18■□□□□ 0.47
Scn4aQ9ER60 1110038B12Rik-208ENSMUST00000174714 520 ntTSL 2 BASIC18■□□□□ 0.47
Scn4aQ9ER60 Gm22877-201ENSMUST00000175451 105 ntBASIC18■□□□□ 0.47
Scn4aQ9ER60 BC026585-203ENSMUST00000193791 778 ntTSL 2 BASIC18■□□□□ 0.47
Scn4aQ9ER60 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
Scn4aQ9ER60 Fcer2a-206ENSMUST00000208438 930 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Scn4aQ9ER60 Fcer2a-208ENSMUST00000208603 930 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Scn4aQ9ER60 Dnd1-201ENSMUST00000061522 1451 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Scn4aQ9ER60 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC18■□□□□ 0.47
Scn4aQ9ER60 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Scn4aQ9ER60 Nxf2-202ENSMUST00000113187 2316 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Scn4aQ9ER60 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Scn4aQ9ER60 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Scn4aQ9ER60 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Scn4aQ9ER60 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Scn4aQ9ER60 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
Scn4aQ9ER60 Gm42941-201ENSMUST00000200347 1321 ntBASIC17.99■□□□□ 0.47
Scn4aQ9ER60 Ifna2-201ENSMUST00000105147 1032 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Scn4aQ9ER60 1700088E04Rik-210ENSMUST00000190509 871 ntTSL 5 BASIC17.99■□□□□ 0.47
Scn4aQ9ER60 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC17.99■□□□□ 0.47
Scn4aQ9ER60 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Scn4aQ9ER60 Rab13-201ENSMUST00000065418 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Scn4aQ9ER60 1700029P11Rik-201ENSMUST00000074608 1024 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Scn4aQ9ER60 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC17.99■□□□□ 0.47
Scn4aQ9ER60 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Scn4aQ9ER60 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Scn4aQ9ER60 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Scn4aQ9ER60 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Scn4aQ9ER60 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC17.99■□□□□ 0.47
Scn4aQ9ER60 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC17.98■□□□□ 0.47
Scn4aQ9ER60 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Scn4aQ9ER60 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Scn4aQ9ER60 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Scn4aQ9ER60 Klk6-201ENSMUST00000107966 1095 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Scn4aQ9ER60 Gm15036-201ENSMUST00000118880 400 ntBASIC17.98■□□□□ 0.47
Scn4aQ9ER60 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Scn4aQ9ER60 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Scn4aQ9ER60 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Scn4aQ9ER60 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Scn4aQ9ER60 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Scn4aQ9ER60 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC17.98■□□□□ 0.47
Scn4aQ9ER60 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Scn4aQ9ER60 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Scn4aQ9ER60 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 50.2 ms