Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Gm2231-201ENSMUST00000125661 612 ntBASIC18.52■□□□□ 0.56
Cpsf1Q9EPU4 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Cpsf1Q9EPU4 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC18.52■□□□□ 0.56
Cpsf1Q9EPU4 Gm37042-201ENSMUST00000193816 581 ntBASIC18.52■□□□□ 0.56
Cpsf1Q9EPU4 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC18.52■□□□□ 0.56
Cpsf1Q9EPU4 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Cpsf1Q9EPU4 Gm6013-201ENSMUST00000212264 699 ntBASIC18.52■□□□□ 0.56
Cpsf1Q9EPU4 Gm32926-201ENSMUST00000214043 681 ntTSL 3 BASIC18.52■□□□□ 0.56
Cpsf1Q9EPU4 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC18.52■□□□□ 0.56
Cpsf1Q9EPU4 Gm9257-201ENSMUST00000221254 232 ntBASIC18.52■□□□□ 0.56
Cpsf1Q9EPU4 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Cpsf1Q9EPU4 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Cpsf1Q9EPU4 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Cpsf1Q9EPU4 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Cpsf1Q9EPU4 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC18.52■□□□□ 0.56
Cpsf1Q9EPU4 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Cpsf1Q9EPU4 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Cpsf1Q9EPU4 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Cpsf1Q9EPU4 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cpsf1Q9EPU4 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cpsf1Q9EPU4 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Cpsf1Q9EPU4 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cpsf1Q9EPU4 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cpsf1Q9EPU4 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cpsf1Q9EPU4 Mir686-201ENSMUST00000102174 109 ntBASIC18.51■□□□□ 0.55
Cpsf1Q9EPU4 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC18.51■□□□□ 0.55
Cpsf1Q9EPU4 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC18.51■□□□□ 0.55
Cpsf1Q9EPU4 Gm5896-201ENSMUST00000189662 1024 ntBASIC18.51■□□□□ 0.55
Cpsf1Q9EPU4 Gm38297-201ENSMUST00000195122 1057 ntBASIC18.51■□□□□ 0.55
Cpsf1Q9EPU4 Gm44974-201ENSMUST00000206387 1279 ntBASIC18.51■□□□□ 0.55
Cpsf1Q9EPU4 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC18.51■□□□□ 0.55
Cpsf1Q9EPU4 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Cpsf1Q9EPU4 Gm5989-201ENSMUST00000096092 2077 ntBASIC18.51■□□□□ 0.55
Cpsf1Q9EPU4 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Cpsf1Q9EPU4 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cpsf1Q9EPU4 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC18.51■□□□□ 0.55
Cpsf1Q9EPU4 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cpsf1Q9EPU4 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cpsf1Q9EPU4 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cpsf1Q9EPU4 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC18.51■□□□□ 0.55
Cpsf1Q9EPU4 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cpsf1Q9EPU4 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
Cpsf1Q9EPU4 Gm14371-201ENSMUST00000138925 1518 ntBASIC18.51■□□□□ 0.55
Cpsf1Q9EPU4 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cpsf1Q9EPU4 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cpsf1Q9EPU4 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cpsf1Q9EPU4 Gm45242-201ENSMUST00000210666 2129 ntBASIC18.5■□□□□ 0.55
Cpsf1Q9EPU4 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cpsf1Q9EPU4 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cpsf1Q9EPU4 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC18.5■□□□□ 0.55
Cpsf1Q9EPU4 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC18.5■□□□□ 0.55
Cpsf1Q9EPU4 AC159896.2-201ENSMUST00000214753 269 ntBASIC18.5■□□□□ 0.55
Cpsf1Q9EPU4 AC154319.1-201ENSMUST00000216330 312 ntBASIC18.5■□□□□ 0.55
Cpsf1Q9EPU4 Gm32025-201ENSMUST00000217960 307 ntBASIC18.5■□□□□ 0.55
Cpsf1Q9EPU4 Gm4935-201ENSMUST00000221316 1198 ntBASIC18.5■□□□□ 0.55
Cpsf1Q9EPU4 AL589735.1-201ENSMUST00000224353 270 ntBASIC18.5■□□□□ 0.55
Cpsf1Q9EPU4 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cpsf1Q9EPU4 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cpsf1Q9EPU4 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cpsf1Q9EPU4 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cpsf1Q9EPU4 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cpsf1Q9EPU4 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Cpsf1Q9EPU4 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cpsf1Q9EPU4 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Cpsf1Q9EPU4 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cpsf1Q9EPU4 Gm11793-201ENSMUST00000120433 981 ntBASIC18.49■□□□□ 0.55
Cpsf1Q9EPU4 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC18.49■□□□□ 0.55
Cpsf1Q9EPU4 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Cpsf1Q9EPU4 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC18.49■□□□□ 0.55
Cpsf1Q9EPU4 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC18.49■□□□□ 0.55
Cpsf1Q9EPU4 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC18.49■□□□□ 0.55
Cpsf1Q9EPU4 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Cpsf1Q9EPU4 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC18.49■□□□□ 0.55
Cpsf1Q9EPU4 Gm43133-201ENSMUST00000197472 463 ntBASIC18.49■□□□□ 0.55
Cpsf1Q9EPU4 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
Cpsf1Q9EPU4 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC18.49■□□□□ 0.55
Cpsf1Q9EPU4 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cpsf1Q9EPU4 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Cpsf1Q9EPU4 Gm18222-201ENSMUST00000202416 1387 ntBASIC18.49■□□□□ 0.55
Cpsf1Q9EPU4 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cpsf1Q9EPU4 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC18.49■□□□□ 0.55
Cpsf1Q9EPU4 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cpsf1Q9EPU4 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cpsf1Q9EPU4 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Cpsf1Q9EPU4 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cpsf1Q9EPU4 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cpsf1Q9EPU4 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Cpsf1Q9EPU4 Gm8801-201ENSMUST00000173255 1064 ntBASIC18.49■□□□□ 0.55
Cpsf1Q9EPU4 Gm22121-201ENSMUST00000175148 54 ntBASIC18.49■□□□□ 0.55
Cpsf1Q9EPU4 1600014C10Rik-203ENSMUST00000177983 403 ntTSL 2 BASIC18.49■□□□□ 0.55
Cpsf1Q9EPU4 Gm44772-201ENSMUST00000207623 1191 ntBASIC18.49■□□□□ 0.55
Cpsf1Q9EPU4 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC18.49■□□□□ 0.55
Cpsf1Q9EPU4 Gm10268-201ENSMUST00000085340 555 ntBASIC18.49■□□□□ 0.55
Cpsf1Q9EPU4 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC18.49■□□□□ 0.55
Cpsf1Q9EPU4 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cpsf1Q9EPU4 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
Cpsf1Q9EPU4 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Cpsf1Q9EPU4 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cpsf1Q9EPU4 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cpsf1Q9EPU4 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 40.1 ms