Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Syne4Q8CII8 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Syne4Q8CII8 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Syne4Q8CII8 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
Syne4Q8CII8 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Syne4Q8CII8 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Syne4Q8CII8 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Syne4Q8CII8 Inhba-201ENSMUST00000042603 6390 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Syne4Q8CII8 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Syne4Q8CII8 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Syne4Q8CII8 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Syne4Q8CII8 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Syne4Q8CII8 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Syne4Q8CII8 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Syne4Q8CII8 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Syne4Q8CII8 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Syne4Q8CII8 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Syne4Q8CII8 Gm6447-201ENSMUST00000118905 835 ntBASIC15.29■□□□□ 0.04
Syne4Q8CII8 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Syne4Q8CII8 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC15.29■□□□□ 0.04
Syne4Q8CII8 Gm4577-201ENSMUST00000135203 716 ntTSL 3 BASIC15.29■□□□□ 0.04
Syne4Q8CII8 Gm26185-201ENSMUST00000157692 266 ntBASIC15.29■□□□□ 0.04
Syne4Q8CII8 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Syne4Q8CII8 AC122371.3-201ENSMUST00000223402 1061 ntBASIC15.29■□□□□ 0.04
Syne4Q8CII8 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Syne4Q8CII8 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Syne4Q8CII8 AC162938.1-201ENSMUST00000213140 2323 ntBASIC15.29■□□□□ 0.04
Syne4Q8CII8 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Syne4Q8CII8 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Syne4Q8CII8 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Syne4Q8CII8 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Syne4Q8CII8 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Syne4Q8CII8 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
Syne4Q8CII8 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Syne4Q8CII8 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC15.28■□□□□ 0.04
Syne4Q8CII8 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Syne4Q8CII8 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Syne4Q8CII8 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Syne4Q8CII8 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Syne4Q8CII8 Pin4-201ENSMUST00000113627 489 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Syne4Q8CII8 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC15.28■□□□□ 0.04
Syne4Q8CII8 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Syne4Q8CII8 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
Syne4Q8CII8 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Syne4Q8CII8 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC15.28■□□□□ 0.04
Syne4Q8CII8 Olfr223-201ENSMUST00000061293 1111 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Syne4Q8CII8 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Syne4Q8CII8 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Syne4Q8CII8 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Syne4Q8CII8 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Syne4Q8CII8 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Syne4Q8CII8 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Syne4Q8CII8 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Syne4Q8CII8 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Syne4Q8CII8 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Syne4Q8CII8 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Syne4Q8CII8 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Syne4Q8CII8 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Syne4Q8CII8 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC15.28■□□□□ 0.04
Syne4Q8CII8 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Syne4Q8CII8 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC15.28■□□□□ 0.04
Syne4Q8CII8 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Syne4Q8CII8 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC15.27■□□□□ 0.04
Syne4Q8CII8 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Syne4Q8CII8 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Syne4Q8CII8 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Syne4Q8CII8 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Syne4Q8CII8 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Syne4Q8CII8 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC15.27■□□□□ 0.04
Syne4Q8CII8 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Syne4Q8CII8 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Syne4Q8CII8 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Syne4Q8CII8 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Syne4Q8CII8 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Syne4Q8CII8 Gm45760-201ENSMUST00000212190 1782 ntBASIC15.27■□□□□ 0.04
Syne4Q8CII8 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Syne4Q8CII8 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC15.27■□□□□ 0.04
Syne4Q8CII8 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
Syne4Q8CII8 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Syne4Q8CII8 Gm11637-201ENSMUST00000120601 592 ntBASIC15.27■□□□□ 0.04
Syne4Q8CII8 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Syne4Q8CII8 Gm11290-201ENSMUST00000124833 396 ntTSL 3 BASIC15.27■□□□□ 0.04
Syne4Q8CII8 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC15.27■□□□□ 0.04
Syne4Q8CII8 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC15.27■□□□□ 0.04
Syne4Q8CII8 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC15.27■□□□□ 0.04
Syne4Q8CII8 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Syne4Q8CII8 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Syne4Q8CII8 Morn2-202ENSMUST00000227729 656 ntBASIC15.27■□□□□ 0.04
Syne4Q8CII8 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Syne4Q8CII8 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Syne4Q8CII8 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Syne4Q8CII8 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
Syne4Q8CII8 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.03
Syne4Q8CII8 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Syne4Q8CII8 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.03
Syne4Q8CII8 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Syne4Q8CII8 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.03
Syne4Q8CII8 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
Syne4Q8CII8 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Syne4Q8CII8 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms