Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC13.23□□□□□ -0.29
Col28a1Q2UY11 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col28a1Q2UY11 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Gm6756-201ENSMUST00000180647 1620 ntBASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Gm12151-201ENSMUST00000121374 290 ntBASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Gm27437-201ENSMUST00000183429 107 ntBASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 AC140375.2-201ENSMUST00000225283 584 ntBASIC13.22□□□□□ -0.29
Col28a1Q2UY11 AC139350.3-201ENSMUST00000226151 420 ntBASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Gm44891-201ENSMUST00000208817 2223 ntBASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC13.22□□□□□ -0.29
Col28a1Q2UY11 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Col28a1Q2UY11 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col28a1Q2UY11 Grin1-202ENSMUST00000114307 4127 ntTSL 5 BASIC13.21□□□□□ -0.29
Col28a1Q2UY11 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col28a1Q2UY11 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC13.21□□□□□ -0.29
Col28a1Q2UY11 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col28a1Q2UY11 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col28a1Q2UY11 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col28a1Q2UY11 Gm11424-201ENSMUST00000121929 829 ntBASIC13.21□□□□□ -0.29
Col28a1Q2UY11 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC13.21□□□□□ -0.29
Col28a1Q2UY11 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Col28a1Q2UY11 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Col28a1Q2UY11 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Col28a1Q2UY11 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Col28a1Q2UY11 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC13.21□□□□□ -0.29
Col28a1Q2UY11 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Col28a1Q2UY11 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
Col28a1Q2UY11 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Col28a1Q2UY11 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC13.21□□□□□ -0.29
Col28a1Q2UY11 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col28a1Q2UY11 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col28a1Q2UY11 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Col28a1Q2UY11 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Col28a1Q2UY11 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Col28a1Q2UY11 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Col28a1Q2UY11 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Col28a1Q2UY11 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
Col28a1Q2UY11 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Col28a1Q2UY11 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col28a1Q2UY11 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Col28a1Q2UY11 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Col28a1Q2UY11 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Col28a1Q2UY11 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Col28a1Q2UY11 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col28a1Q2UY11 Gm5939-201ENSMUST00000119613 2874 ntBASIC13.2□□□□□ -0.3
Col28a1Q2UY11 Ntrk2-204ENSMUST00000224259 3049 ntBASIC13.2□□□□□ -0.3
Col28a1Q2UY11 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC13.2□□□□□ -0.3
Col28a1Q2UY11 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Col28a1Q2UY11 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Col28a1Q2UY11 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col28a1Q2UY11 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC13.2□□□□□ -0.3
Col28a1Q2UY11 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC13.2□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 41.2 ms