Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 n-R5s211-201ENSMUST00000093689 119 ntBASIC20.37■□□□□ 0.85
Col17a1Q07563 Gm6040-201ENSMUST00000095430 857 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col17a1Q07563 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col17a1Q07563 Gm45242-201ENSMUST00000210666 2129 ntBASIC20.37■□□□□ 0.85
Col17a1Q07563 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Col17a1Q07563 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col17a1Q07563 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Col17a1Q07563 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Col17a1Q07563 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col17a1Q07563 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC20.37■□□□□ 0.85
Col17a1Q07563 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col17a1Q07563 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col17a1Q07563 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Col17a1Q07563 Efcab14-203ENSMUST00000106524 1544 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Col17a1Q07563 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col17a1Q07563 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC20.37■□□□□ 0.85
Col17a1Q07563 BB557941-201ENSMUST00000126549 1097 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Col17a1Q07563 Iqcf3-202ENSMUST00000186668 633 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Col17a1Q07563 Gm42682-201ENSMUST00000198349 1265 ntBASIC20.37■□□□□ 0.85
Col17a1Q07563 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Col17a1Q07563 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col17a1Q07563 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col17a1Q07563 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col17a1Q07563 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col17a1Q07563 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col17a1Q07563 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col17a1Q07563 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col17a1Q07563 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col17a1Q07563 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col17a1Q07563 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Col17a1Q07563 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC20.36■□□□□ 0.85
Col17a1Q07563 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC20.36■□□□□ 0.85
Col17a1Q07563 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC20.36■□□□□ 0.85
Col17a1Q07563 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col17a1Q07563 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC20.36■□□□□ 0.85
Col17a1Q07563 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC20.36■□□□□ 0.85
Col17a1Q07563 Gm12783-201ENSMUST00000121425 397 ntBASIC20.36■□□□□ 0.85
Col17a1Q07563 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col17a1Q07563 Asgr1-205ENSMUST00000146411 1188 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col17a1Q07563 Fcgr2b-203ENSMUST00000159688 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col17a1Q07563 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
Col17a1Q07563 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Col17a1Q07563 Gm44980-201ENSMUST00000205826 314 ntBASIC20.36■□□□□ 0.85
Col17a1Q07563 Rab13-201ENSMUST00000065418 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col17a1Q07563 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col17a1Q07563 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col17a1Q07563 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Col17a1Q07563 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col17a1Q07563 Gm15784-201ENSMUST00000120260 1462 ntBASIC20.35■□□□□ 0.85
Col17a1Q07563 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Col17a1Q07563 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Col17a1Q07563 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col17a1Q07563 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Col17a1Q07563 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Col17a1Q07563 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col17a1Q07563 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Col17a1Q07563 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col17a1Q07563 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col17a1Q07563 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col17a1Q07563 AC158355.1-201ENSMUST00000215895 1705 ntBASIC20.35■□□□□ 0.85
Col17a1Q07563 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col17a1Q07563 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col17a1Q07563 Gm44329-201ENSMUST00000197469 112 ntBASIC20.35■□□□□ 0.85
Col17a1Q07563 Gm4924-205ENSMUST00000211099 490 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Col17a1Q07563 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Col17a1Q07563 Bloc1s1-201ENSMUST00000026405 550 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col17a1Q07563 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col17a1Q07563 AC130671.2-201ENSMUST00000227224 1621 ntBASIC20.35■□□□□ 0.85
Col17a1Q07563 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Col17a1Q07563 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC20.34■□□□□ 0.85
Col17a1Q07563 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col17a1Q07563 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col17a1Q07563 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col17a1Q07563 Gramd2-201ENSMUST00000098661 1368 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col17a1Q07563 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col17a1Q07563 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Col17a1Q07563 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col17a1Q07563 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col17a1Q07563 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col17a1Q07563 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col17a1Q07563 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col17a1Q07563 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC20.34■□□□□ 0.85
Col17a1Q07563 Gm14585-201ENSMUST00000120713 634 ntBASIC20.34■□□□□ 0.85
Col17a1Q07563 Gm5733-201ENSMUST00000190232 939 ntBASIC20.34■□□□□ 0.85
Col17a1Q07563 2010109P13Rik-201ENSMUST00000204605 392 ntBASIC20.34■□□□□ 0.85
Col17a1Q07563 AC134537.1-201ENSMUST00000219205 265 ntBASIC20.34■□□□□ 0.85
Col17a1Q07563 AC133602.1-201ENSMUST00000227510 509 ntBASIC20.34■□□□□ 0.85
Col17a1Q07563 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col17a1Q07563 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col17a1Q07563 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col17a1Q07563 Llph-201ENSMUST00000020444 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col17a1Q07563 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col17a1Q07563 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col17a1Q07563 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col17a1Q07563 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Col17a1Q07563 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col17a1Q07563 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
Col17a1Q07563 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Col17a1Q07563 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
Col17a1Q07563 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms