Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Gm19585-201ENSMUST00000186007 587 ntTSL 2 BASIC13.37□□□□□ -0.27
Col9a1Q05722 Gm8176-201ENSMUST00000191297 1099 ntBASIC13.37□□□□□ -0.27
Col9a1Q05722 Gm44405-201ENSMUST00000198952 126 ntBASIC13.37□□□□□ -0.27
Col9a1Q05722 Ighv1-86-201ENSMUST00000200562 353 ntBASIC13.37□□□□□ -0.27
Col9a1Q05722 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC13.37□□□□□ -0.27
Col9a1Q05722 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC13.37□□□□□ -0.27
Col9a1Q05722 AC160061.1-201ENSMUST00000217766 533 ntTSL 3 BASIC13.37□□□□□ -0.27
Col9a1Q05722 AC153361.2-203ENSMUST00000218083 661 ntTSL 3 BASIC13.37□□□□□ -0.27
Col9a1Q05722 C1qb-201ENSMUST00000046384 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col9a1Q05722 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col9a1Q05722 Manf-201ENSMUST00000069036 960 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Col9a1Q05722 1700001J03Rik-201ENSMUST00000073721 787 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col9a1Q05722 Zfp865-202ENSMUST00000076791 1129 ntBASIC13.37□□□□□ -0.27
Col9a1Q05722 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC13.37□□□□□ -0.27
Col9a1Q05722 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Col9a1Q05722 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col9a1Q05722 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col9a1Q05722 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC13.37□□□□□ -0.27
Col9a1Q05722 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC13.37□□□□□ -0.27
Col9a1Q05722 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
Col9a1Q05722 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Col9a1Q05722 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col9a1Q05722 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col9a1Q05722 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col9a1Q05722 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col9a1Q05722 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col9a1Q05722 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col9a1Q05722 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col9a1Q05722 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col9a1Q05722 Gm38325-201ENSMUST00000194507 1377 ntBASIC13.36□□□□□ -0.27
Col9a1Q05722 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col9a1Q05722 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col9a1Q05722 Rffl-205ENSMUST00000103218 1264 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col9a1Q05722 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col9a1Q05722 Gm12286-201ENSMUST00000119246 1002 ntBASIC13.36□□□□□ -0.27
Col9a1Q05722 Gm13385-201ENSMUST00000121089 220 ntBASIC13.36□□□□□ -0.27
Col9a1Q05722 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col9a1Q05722 C330019F10Rik-201ENSMUST00000149428 459 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col9a1Q05722 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col9a1Q05722 Gm17058-201ENSMUST00000168951 928 ntTSL 5 BASIC13.36□□□□□ -0.27
Col9a1Q05722 Insig2-214ENSMUST00000186915 674 ntTSL 3 BASIC13.36□□□□□ -0.27
Col9a1Q05722 4921511E07Rik-201ENSMUST00000194790 827 ntBASIC13.36□□□□□ -0.27
Col9a1Q05722 Pip-202ENSMUST00000203244 736 ntTSL 3 BASIC13.36□□□□□ -0.27
Col9a1Q05722 Gm45399-201ENSMUST00000209955 1016 ntBASIC13.36□□□□□ -0.27
Col9a1Q05722 Scoc-209ENSMUST00000212905 798 ntAPPRIS P3 TSL 3 BASIC13.36□□□□□ -0.27
Col9a1Q05722 AC154838.2-201ENSMUST00000226602 747 ntBASIC13.36□□□□□ -0.27
Col9a1Q05722 AC154683.1-201ENSMUST00000228409 1284 ntBASIC13.36□□□□□ -0.27
Col9a1Q05722 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col9a1Q05722 Lst1-201ENSMUST00000097336 415 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col9a1Q05722 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col9a1Q05722 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col9a1Q05722 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col9a1Q05722 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col9a1Q05722 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Col9a1Q05722 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col9a1Q05722 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Col9a1Q05722 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col9a1Q05722 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col9a1Q05722 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Col9a1Q05722 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col9a1Q05722 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col9a1Q05722 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col9a1Q05722 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col9a1Q05722 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col9a1Q05722 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col9a1Q05722 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col9a1Q05722 Gm3283-201ENSMUST00000199319 1350 ntBASIC13.35□□□□□ -0.27
Col9a1Q05722 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col9a1Q05722 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col9a1Q05722 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col9a1Q05722 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col9a1Q05722 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col9a1Q05722 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Col9a1Q05722 Klra5-202ENSMUST00000118060 1279 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Col9a1Q05722 Gm16001-201ENSMUST00000127989 875 ntTSL 3 BASIC13.35□□□□□ -0.27
Col9a1Q05722 Gm15972-201ENSMUST00000132571 418 ntTSL 2 BASIC13.35□□□□□ -0.27
Col9a1Q05722 Gm11656-201ENSMUST00000137462 395 ntTSL 5 BASIC13.35□□□□□ -0.27
Col9a1Q05722 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC13.35□□□□□ -0.27
Col9a1Q05722 Klra5-201ENSMUST00000014683 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col9a1Q05722 Slc2a4rg-ps-202ENSMUST00000176590 1143 ntBASIC13.35□□□□□ -0.27
Col9a1Q05722 Gm24420-201ENSMUST00000176676 59 ntBASIC13.35□□□□□ -0.27
Col9a1Q05722 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC13.35□□□□□ -0.27
Col9a1Q05722 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC13.35□□□□□ -0.27
Col9a1Q05722 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC13.35□□□□□ -0.27
Col9a1Q05722 Gm42732-201ENSMUST00000202887 1197 ntBASIC13.35□□□□□ -0.27
Col9a1Q05722 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col9a1Q05722 Olfr707-202ENSMUST00000208759 1242 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
Col9a1Q05722 Gm45338-201ENSMUST00000209198 820 ntTSL 5 BASIC13.35□□□□□ -0.27
Col9a1Q05722 Nps-202ENSMUST00000210697 1082 ntTSL 5 BASIC13.35□□□□□ -0.27
Col9a1Q05722 Acy1-209ENSMUST00000215395 1051 ntTSL 5 BASIC13.35□□□□□ -0.27
Col9a1Q05722 Acy1-211ENSMUST00000216400 1030 ntTSL 5 BASIC13.35□□□□□ -0.27
Col9a1Q05722 Dhrs4-202ENSMUST00000226168 828 ntBASIC13.35□□□□□ -0.27
Col9a1Q05722 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col9a1Q05722 Psmb7-201ENSMUST00000028083 1160 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col9a1Q05722 9230110F15Rik-201ENSMUST00000054175 1135 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col9a1Q05722 Olfr117-201ENSMUST00000073636 954 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Col9a1Q05722 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Col9a1Q05722 4930465M20Rik-201ENSMUST00000130564 1446 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Col9a1Q05722 Spata48-201ENSMUST00000020410 1430 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Col9a1Q05722 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms