Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col6a1Q04857 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a1Q04857 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a1Q04857 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a1Q04857 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a1Q04857 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a1Q04857 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC14.99□□□□□ -0.01
Col6a1Q04857 4930528D03Rik-203ENSMUST00000225577 1348 ntBASIC14.99□□□□□ -0.01
Col6a1Q04857 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a1Q04857 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a1Q04857 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a1Q04857 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a1Q04857 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a1Q04857 Gm38000-201ENSMUST00000192390 1215 ntBASIC14.99□□□□□ -0.01
Col6a1Q04857 Olfr284-202ENSMUST00000206647 966 ntBASIC14.99□□□□□ -0.01
Col6a1Q04857 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC14.99□□□□□ -0.01
Col6a1Q04857 CT573034.1-201ENSMUST00000222983 313 ntBASIC14.99□□□□□ -0.01
Col6a1Q04857 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a1Q04857 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a1Q04857 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a1Q04857 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a1Q04857 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
Col6a1Q04857 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a1Q04857 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a1Q04857 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a1Q04857 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a1Q04857 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a1Q04857 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a1Q04857 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC14.99□□□□□ -0.01
Col6a1Q04857 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a1Q04857 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a1Q04857 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC14.99□□□□□ -0.01
Col6a1Q04857 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
Col6a1Q04857 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col6a1Q04857 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
Col6a1Q04857 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col6a1Q04857 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col6a1Q04857 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col6a1Q04857 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC14.98□□□□□ -0.01
Col6a1Q04857 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col6a1Q04857 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Col6a1Q04857 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col6a1Q04857 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC14.98□□□□□ -0.01
Col6a1Q04857 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Col6a1Q04857 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col6a1Q04857 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Col6a1Q04857 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col6a1Q04857 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC14.98□□□□□ -0.01
Col6a1Q04857 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
Col6a1Q04857 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col6a1Q04857 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC14.98□□□□□ -0.01
Col6a1Q04857 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC14.98□□□□□ -0.01
Col6a1Q04857 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col6a1Q04857 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC14.98□□□□□ -0.01
Col6a1Q04857 Mir433-201ENSMUST00000093564 124 ntBASIC14.98□□□□□ -0.01
Col6a1Q04857 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
Col6a1Q04857 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col6a1Q04857 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
Col6a1Q04857 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col6a1Q04857 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col6a1Q04857 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
Col6a1Q04857 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC14.98□□□□□ -0.01
Col6a1Q04857 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
Col6a1Q04857 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col6a1Q04857 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC14.98□□□□□ -0.01
Col6a1Q04857 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC14.98□□□□□ -0.01
Col6a1Q04857 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC14.98□□□□□ -0.01
Col6a1Q04857 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col6a1Q04857 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC14.97□□□□□ -0.01
Col6a1Q04857 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col6a1Q04857 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col6a1Q04857 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Col6a1Q04857 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Col6a1Q04857 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC14.97□□□□□ -0.01
Col6a1Q04857 Gm4081-201ENSMUST00000195287 1838 ntBASIC14.97□□□□□ -0.01
Col6a1Q04857 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col6a1Q04857 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col6a1Q04857 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Col6a1Q04857 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Col6a1Q04857 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Col6a1Q04857 Gm12203-201ENSMUST00000118235 598 ntBASIC14.97□□□□□ -0.01
Col6a1Q04857 Gm12209-201ENSMUST00000120089 596 ntBASIC14.97□□□□□ -0.01
Col6a1Q04857 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
Col6a1Q04857 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC14.97□□□□□ -0.01
Col6a1Q04857 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col6a1Q04857 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC14.97□□□□□ -0.01
Col6a1Q04857 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Col6a1Q04857 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Col6a1Q04857 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Col6a1Q04857 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col6a1Q04857 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col6a1Q04857 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col6a1Q04857 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
Col6a1Q04857 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col6a1Q04857 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
Col6a1Q04857 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col6a1Q04857 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col6a1Q04857 Gulp1-203ENSMUST00000160854 1399 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Col6a1Q04857 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC14.97□□□□□ -0.01
Col6a1Q04857 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC14.97□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 66.3 ms