Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx1P18111 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx1P18111 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC10.99□□□□□ -0.65
Cdx1P18111 Tor3a-201ENSMUST00000079625 3285 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC10.99□□□□□ -0.65
Cdx1P18111 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Fam234b-202ENSMUST00000111916 2927 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC10.99□□□□□ -0.65
Cdx1P18111 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC10.99□□□□□ -0.65
Cdx1P18111 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC10.99□□□□□ -0.65
Cdx1P18111 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Slc6a13-201ENSMUST00000064580 2234 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC10.99□□□□□ -0.65
Cdx1P18111 AA543401-201ENSMUST00000164248 1269 ntBASIC10.99□□□□□ -0.65
Cdx1P18111 Mir6990-201ENSMUST00000183724 91 ntBASIC10.99□□□□□ -0.65
Cdx1P18111 Gm2272-201ENSMUST00000194903 582 ntBASIC10.99□□□□□ -0.65
Cdx1P18111 Gm5628-201ENSMUST00000222318 1049 ntBASIC10.99□□□□□ -0.65
Cdx1P18111 AC160980.1-201ENSMUST00000224136 970 ntBASIC10.99□□□□□ -0.65
Cdx1P18111 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Mxra8os-201ENSMUST00000097740 687 ntBASIC10.99□□□□□ -0.65
Cdx1P18111 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC10.99□□□□□ -0.65
Cdx1P18111 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC10.99□□□□□ -0.65
Cdx1P18111 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC10.99□□□□□ -0.65
Cdx1P18111 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Alx4-202ENSMUST00000111254 7056 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Gm13410-201ENSMUST00000117058 1415 ntBASIC10.99□□□□□ -0.65
Cdx1P18111 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Gfod2-201ENSMUST00000013294 4352 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC10.99□□□□□ -0.65
Cdx1P18111 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC10.99□□□□□ -0.65
Cdx1P18111 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC10.99□□□□□ -0.65
Cdx1P18111 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cdx1P18111 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cdx1P18111 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cdx1P18111 A330093E20Rik-202ENSMUST00000184994 2327 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Cdx1P18111 Gm44086-201ENSMUST00000203251 2349 ntBASIC10.98□□□□□ -0.65
Cdx1P18111 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC10.98□□□□□ -0.65
Cdx1P18111 Dnajc12-201ENSMUST00000043317 3025 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cdx1P18111 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cdx1P18111 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Cdx1P18111 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cdx1P18111 Gm15889-202ENSMUST00000212669 2443 ntBASIC10.98□□□□□ -0.65
Cdx1P18111 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cdx1P18111 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC10.98□□□□□ -0.65
Cdx1P18111 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC10.98□□□□□ -0.65
Cdx1P18111 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cdx1P18111 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC10.98□□□□□ -0.65
Cdx1P18111 Arsa-202ENSMUST00000165199 3492 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cdx1P18111 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cdx1P18111 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cdx1P18111 Gfra1-203ENSMUST00000129100 4415 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Cdx1P18111 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC10.98□□□□□ -0.65
Cdx1P18111 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cdx1P18111 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cdx1P18111 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cdx1P18111 Pcdhac1-201ENSMUST00000007584 5419 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cdx1P18111 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC10.98□□□□□ -0.65
Cdx1P18111 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC10.98□□□□□ -0.65
Cdx1P18111 Gm11745-201ENSMUST00000121669 448 ntBASIC10.98□□□□□ -0.65
Cdx1P18111 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC10.98□□□□□ -0.65
Cdx1P18111 Gm18889-201ENSMUST00000174284 929 ntBASIC10.98□□□□□ -0.65
Cdx1P18111 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cdx1P18111 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Cdx1P18111 Gm19817-201ENSMUST00000199764 2132 ntBASIC10.98□□□□□ -0.65
Cdx1P18111 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC10.98□□□□□ -0.65
Cdx1P18111 AC140397.2-201ENSMUST00000224213 834 ntBASIC10.98□□□□□ -0.65
Cdx1P18111 Gpr146-202ENSMUST00000053120 1040 ntBASIC10.98□□□□□ -0.65
Cdx1P18111 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Cdx1P18111 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cdx1P18111 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC10.98□□□□□ -0.65
Cdx1P18111 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cdx1P18111 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Cdx1P18111 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cdx1P18111 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cdx1P18111 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Cdx1P18111 Zfp64-201ENSMUST00000087971 2438 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Cdx1P18111 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms