Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
Vps28Q9D1C8 AC238811.3-201ENSMUST00000225422 709 ntBASIC13.96□□□□□ -0.17
Vps28Q9D1C8 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Vps28Q9D1C8 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Vps28Q9D1C8 Ildr2-201ENSMUST00000111416 8251 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Vps28Q9D1C8 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
Vps28Q9D1C8 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Vps28Q9D1C8 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Vps28Q9D1C8 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Vps28Q9D1C8 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
Vps28Q9D1C8 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Vps28Q9D1C8 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC13.96□□□□□ -0.18
Vps28Q9D1C8 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Vps28Q9D1C8 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Vps28Q9D1C8 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Vps28Q9D1C8 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
Vps28Q9D1C8 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Vps28Q9D1C8 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Gm11524-201ENSMUST00000119349 807 ntBASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Gm14730-201ENSMUST00000122378 1045 ntBASIC13.95□□□□□ -0.18
Vps28Q9D1C8 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Gm7558-201ENSMUST00000193221 1165 ntBASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Gm7498-201ENSMUST00000203282 1084 ntBASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 AC161252.3-201ENSMUST00000225465 1549 ntBASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Vps28Q9D1C8 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Vps28Q9D1C8 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Vps28Q9D1C8 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Vps28Q9D1C8 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Vps28Q9D1C8 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Vps28Q9D1C8 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Vps28Q9D1C8 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Vps28Q9D1C8 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Vps28Q9D1C8 Gm8337-201ENSMUST00000187358 1938 ntBASIC13.94□□□□□ -0.18
Vps28Q9D1C8 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Vps28Q9D1C8 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
Vps28Q9D1C8 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Vps28Q9D1C8 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Vps28Q9D1C8 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Vps28Q9D1C8 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Vps28Q9D1C8 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Vps28Q9D1C8 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Vps28Q9D1C8 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Vps28Q9D1C8 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC13.94□□□□□ -0.18
Vps28Q9D1C8 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC13.94□□□□□ -0.18
Vps28Q9D1C8 AC156560.2-201ENSMUST00000221232 264 ntBASIC13.94□□□□□ -0.18
Vps28Q9D1C8 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Vps28Q9D1C8 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Vps28Q9D1C8 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Vps28Q9D1C8 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Vps28Q9D1C8 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Vps28Q9D1C8 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Vps28Q9D1C8 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
Vps28Q9D1C8 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Vps28Q9D1C8 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Vps28Q9D1C8 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Vps28Q9D1C8 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Vps28Q9D1C8 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Vps28Q9D1C8 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms