Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Smc1aQ9CU62 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Smc1aQ9CU62 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Smc1aQ9CU62 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Smc1aQ9CU62 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Smc1aQ9CU62 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
Smc1aQ9CU62 Gm22189-201ENSMUST00000103822 86 ntBASIC15.27■□□□□ 0.04
Smc1aQ9CU62 Gm11478-201ENSMUST00000117851 599 ntBASIC15.27■□□□□ 0.04
Smc1aQ9CU62 Gm14042-201ENSMUST00000120139 833 ntBASIC15.27■□□□□ 0.04
Smc1aQ9CU62 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC15.27■□□□□ 0.04
Smc1aQ9CU62 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Smc1aQ9CU62 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Smc1aQ9CU62 Gm9522-201ENSMUST00000182394 926 ntBASIC15.27■□□□□ 0.04
Smc1aQ9CU62 Gm42612-201ENSMUST00000197986 623 ntBASIC15.27■□□□□ 0.04
Smc1aQ9CU62 Gm18018-201ENSMUST00000198273 408 ntBASIC15.27■□□□□ 0.04
Smc1aQ9CU62 Gm43170-201ENSMUST00000199827 612 ntBASIC15.27■□□□□ 0.04
Smc1aQ9CU62 Gm9182-201ENSMUST00000217829 639 ntBASIC15.27■□□□□ 0.04
Smc1aQ9CU62 AC130829.1-201ENSMUST00000221548 494 ntBASIC15.27■□□□□ 0.04
Smc1aQ9CU62 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Smc1aQ9CU62 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Smc1aQ9CU62 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Smc1aQ9CU62 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Smc1aQ9CU62 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Smc1aQ9CU62 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.03
Smc1aQ9CU62 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Smc1aQ9CU62 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Smc1aQ9CU62 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Smc1aQ9CU62 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Gm45384-201ENSMUST00000210451 277 ntBASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Nfatc2-202ENSMUST00000074618 6637 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Smc1aQ9CU62 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Smc1aQ9CU62 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Smc1aQ9CU62 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Smc1aQ9CU62 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC15.25■□□□□ 0.03
Smc1aQ9CU62 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Smc1aQ9CU62 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Smc1aQ9CU62 Gm15163-201ENSMUST00000120749 1302 ntBASIC15.25■□□□□ 0.03
Smc1aQ9CU62 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Smc1aQ9CU62 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Smc1aQ9CU62 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Smc1aQ9CU62 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Smc1aQ9CU62 Gm8749-201ENSMUST00000117737 331 ntBASIC15.25■□□□□ 0.03
Smc1aQ9CU62 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC15.25■□□□□ 0.03
Smc1aQ9CU62 Gm12091-201ENSMUST00000146791 830 ntBASIC15.25■□□□□ 0.03
Smc1aQ9CU62 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC15.25■□□□□ 0.03
Smc1aQ9CU62 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC15.25■□□□□ 0.03
Smc1aQ9CU62 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC15.25■□□□□ 0.03
Smc1aQ9CU62 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Smc1aQ9CU62 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC15.25■□□□□ 0.03
Smc1aQ9CU62 Gm7390-201ENSMUST00000212452 1216 ntBASIC15.25■□□□□ 0.03
Smc1aQ9CU62 Adamts20-204ENSMUST00000155907 6886 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Smc1aQ9CU62 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Smc1aQ9CU62 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Smc1aQ9CU62 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Smc1aQ9CU62 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC15.25■□□□□ 0.03
Smc1aQ9CU62 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Smc1aQ9CU62 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Smc1aQ9CU62 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Smc1aQ9CU62 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Smc1aQ9CU62 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Smc1aQ9CU62 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Smc1aQ9CU62 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Smc1aQ9CU62 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Smc1aQ9CU62 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Smc1aQ9CU62 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 38.2 ms