Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gm12960-201ENSMUST00000120017 1066 ntBASIC15.27■□□□□ 0.04
Ushbp1Q8R370 Gm13385-201ENSMUST00000121089 220 ntBASIC15.27■□□□□ 0.04
Ushbp1Q8R370 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC15.27■□□□□ 0.04
Ushbp1Q8R370 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Ushbp1Q8R370 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
Ushbp1Q8R370 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
Ushbp1Q8R370 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ushbp1Q8R370 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Ushbp1Q8R370 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Ushbp1Q8R370 Gm43630-201ENSMUST00000201550 776 ntBASIC15.27■□□□□ 0.04
Ushbp1Q8R370 Gm6007-201ENSMUST00000208170 823 ntBASIC15.27■□□□□ 0.04
Ushbp1Q8R370 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC15.27■□□□□ 0.04
Ushbp1Q8R370 AC154846.1-201ENSMUST00000226278 862 ntBASIC15.27■□□□□ 0.04
Ushbp1Q8R370 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Ushbp1Q8R370 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ushbp1Q8R370 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ushbp1Q8R370 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ushbp1Q8R370 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.03
Ushbp1Q8R370 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ushbp1Q8R370 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ushbp1Q8R370 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Ushbp1Q8R370 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Ushbp1Q8R370 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ushbp1Q8R370 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Ushbp1Q8R370 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ushbp1Q8R370 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Ushbp1Q8R370 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ushbp1Q8R370 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ushbp1Q8R370 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ushbp1Q8R370 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ushbp1Q8R370 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Ushbp1Q8R370 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Ushbp1Q8R370 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ushbp1Q8R370 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ushbp1Q8R370 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ushbp1Q8R370 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Ushbp1Q8R370 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ushbp1Q8R370 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC15.26■□□□□ 0.03
Ushbp1Q8R370 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Ushbp1Q8R370 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ushbp1Q8R370 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC15.26■□□□□ 0.03
Ushbp1Q8R370 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ushbp1Q8R370 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC15.26■□□□□ 0.03
Ushbp1Q8R370 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ushbp1Q8R370 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC15.26■□□□□ 0.03
Ushbp1Q8R370 Mir6420-201ENSMUST00000185032 102 ntBASIC15.26■□□□□ 0.03
Ushbp1Q8R370 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
Ushbp1Q8R370 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Ushbp1Q8R370 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC15.26■□□□□ 0.03
Ushbp1Q8R370 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ushbp1Q8R370 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ushbp1Q8R370 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ushbp1Q8R370 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ushbp1Q8R370 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ushbp1Q8R370 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ushbp1Q8R370 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Ushbp1Q8R370 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
Ushbp1Q8R370 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Ushbp1Q8R370 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ushbp1Q8R370 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Ushbp1Q8R370 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ushbp1Q8R370 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ushbp1Q8R370 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Gm11425-201ENSMUST00000119608 498 ntBASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Gm9396-201ENSMUST00000076703 567 ntBASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Ptpn11-202ENSMUST00000100770 5599 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms