Protein–RNA interactions for Protein: Q8R1T1

Chmp7, Charged multivesicular body protein 7, mousemouse

Predictions only

Length 451 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp7Q8R1T1 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Gm44064-201ENSMUST00000204964 1087 ntBASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Gm45684-201ENSMUST00000210244 1571 ntBASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Gm17823-201ENSMUST00000217830 1006 ntBASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Gm17383-201ENSMUST00000078739 1041 ntBASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Chmp7Q8R1T1 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Chmp7Q8R1T1 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Chmp7Q8R1T1 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Chmp7Q8R1T1 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Chmp7Q8R1T1 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
Chmp7Q8R1T1 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC17.33■□□□□ 0.37
Chmp7Q8R1T1 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
Chmp7Q8R1T1 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Chmp7Q8R1T1 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Chmp7Q8R1T1 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Chmp7Q8R1T1 Gm14723-201ENSMUST00000118686 215 ntBASIC17.33■□□□□ 0.36
Chmp7Q8R1T1 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
Chmp7Q8R1T1 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Chmp7Q8R1T1 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Chmp7Q8R1T1 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC17.33■□□□□ 0.36
Chmp7Q8R1T1 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC17.33■□□□□ 0.36
Chmp7Q8R1T1 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC17.33■□□□□ 0.36
Chmp7Q8R1T1 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Chmp7Q8R1T1 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Chmp7Q8R1T1 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
Chmp7Q8R1T1 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
Chmp7Q8R1T1 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Chmp7Q8R1T1 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Chmp7Q8R1T1 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Chmp7Q8R1T1 Adgrb2-206ENSMUST00000106018 4470 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
Chmp7Q8R1T1 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Chmp7Q8R1T1 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
Chmp7Q8R1T1 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
Chmp7Q8R1T1 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Chmp7Q8R1T1 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Chmp7Q8R1T1 Gm43598-201ENSMUST00000202482 2479 ntBASIC17.32■□□□□ 0.36
Chmp7Q8R1T1 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC17.32■□□□□ 0.36
Chmp7Q8R1T1 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Chmp7Q8R1T1 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Chmp7Q8R1T1 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Chmp7Q8R1T1 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Chmp7Q8R1T1 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC17.32■□□□□ 0.36
Chmp7Q8R1T1 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC17.32■□□□□ 0.36
Chmp7Q8R1T1 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Chmp7Q8R1T1 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Chmp7Q8R1T1 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Chmp7Q8R1T1 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Chmp7Q8R1T1 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Chmp7Q8R1T1 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC17.32■□□□□ 0.36
Chmp7Q8R1T1 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC17.32■□□□□ 0.36
Chmp7Q8R1T1 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
Chmp7Q8R1T1 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Chmp7Q8R1T1 Snora73a-201ENSMUST00000082453 205 ntBASIC17.32■□□□□ 0.36
Chmp7Q8R1T1 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Chmp7Q8R1T1 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
Chmp7Q8R1T1 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Chmp7Q8R1T1 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Chmp7Q8R1T1 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Chmp7Q8R1T1 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Chmp7Q8R1T1 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Chmp7Q8R1T1 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Chmp7Q8R1T1 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Chmp7Q8R1T1 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Chmp7Q8R1T1 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
Chmp7Q8R1T1 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Chmp7Q8R1T1 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Chmp7Q8R1T1 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Chmp7Q8R1T1 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC17.31■□□□□ 0.36
Chmp7Q8R1T1 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Chmp7Q8R1T1 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms