Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Gm45638-201ENSMUST00000211507 2878 ntBASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Mir1897-201ENSMUST00000122581 272 ntBASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Gm6473-201ENSMUST00000188572 1210 ntBASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Gm18041-201ENSMUST00000218210 618 ntBASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Shd-206ENSMUST00000225145 998 ntBASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Sh3rf1Q69ZI1 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Gm3365-201ENSMUST00000216296 1480 ntBASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Gm7002-201ENSMUST00000221386 2165 ntBASIC13.81□□□□□ -0.2
Sh3rf1Q69ZI1 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sh3rf1Q69ZI1 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms