Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim28Q62318 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Trim28Q62318 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim28Q62318 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim28Q62318 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim28Q62318 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim28Q62318 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim28Q62318 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim28Q62318 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim28Q62318 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Trim28Q62318 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim28Q62318 Gm38058-201ENSMUST00000194323 4368 ntBASIC17.54■□□□□ 0.4
Trim28Q62318 Gm12846-201ENSMUST00000120431 1373 ntBASIC17.53■□□□□ 0.4
Trim28Q62318 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC17.53■□□□□ 0.4
Trim28Q62318 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim28Q62318 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trim28Q62318 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim28Q62318 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim28Q62318 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trim28Q62318 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC17.53■□□□□ 0.4
Trim28Q62318 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim28Q62318 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trim28Q62318 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC17.53■□□□□ 0.4
Trim28Q62318 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trim28Q62318 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trim28Q62318 Gm37912-201ENSMUST00000191895 3076 ntBASIC17.53■□□□□ 0.4
Trim28Q62318 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Trim28Q62318 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim28Q62318 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC17.53■□□□□ 0.4
Trim28Q62318 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim28Q62318 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC17.53■□□□□ 0.4
Trim28Q62318 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trim28Q62318 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC17.53■□□□□ 0.4
Trim28Q62318 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim28Q62318 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim28Q62318 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim28Q62318 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim28Q62318 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim28Q62318 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim28Q62318 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim28Q62318 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim28Q62318 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC17.53■□□□□ 0.4
Trim28Q62318 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim28Q62318 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
Trim28Q62318 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim28Q62318 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim28Q62318 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim28Q62318 Mir686-201ENSMUST00000102174 109 ntBASIC17.52■□□□□ 0.4
Trim28Q62318 Gm16479-201ENSMUST00000121706 932 ntBASIC17.52■□□□□ 0.4
Trim28Q62318 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC17.52■□□□□ 0.4
Trim28Q62318 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Trim28Q62318 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Trim28Q62318 Gm25927-201ENSMUST00000175058 117 ntBASIC17.52■□□□□ 0.4
Trim28Q62318 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Trim28Q62318 Gm38002-201ENSMUST00000193255 180 ntBASIC17.52■□□□□ 0.4
Trim28Q62318 Gm43118-201ENSMUST00000199149 775 ntBASIC17.52■□□□□ 0.4
Trim28Q62318 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC17.52■□□□□ 0.4
Trim28Q62318 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim28Q62318 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Trim28Q62318 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim28Q62318 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
Trim28Q62318 AC148324.1-201ENSMUST00000219034 4240 ntBASIC17.52■□□□□ 0.39
Trim28Q62318 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
Trim28Q62318 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
Trim28Q62318 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trim28Q62318 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Trim28Q62318 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trim28Q62318 Gm4782-201ENSMUST00000168705 2046 ntBASIC17.52■□□□□ 0.39
Trim28Q62318 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trim28Q62318 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trim28Q62318 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC17.52■□□□□ 0.39
Trim28Q62318 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Trim28Q62318 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim28Q62318 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim28Q62318 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trim28Q62318 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim28Q62318 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trim28Q62318 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC17.51■□□□□ 0.39
Trim28Q62318 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC17.51■□□□□ 0.39
Trim28Q62318 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC17.51■□□□□ 0.39
Trim28Q62318 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trim28Q62318 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim28Q62318 Gm6222-202ENSMUST00000182143 629 ntBASIC17.51■□□□□ 0.39
Trim28Q62318 Gm27572-201ENSMUST00000183702 255 ntBASIC17.51■□□□□ 0.39
Trim28Q62318 Rfx7-205ENSMUST00000184015 1554 ntTSL 5 BASIC17.51■□□□□ 0.39
Trim28Q62318 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC17.51■□□□□ 0.39
Trim28Q62318 AC133598.1-201ENSMUST00000224327 660 ntBASIC17.51■□□□□ 0.39
Trim28Q62318 Gm9823-201ENSMUST00000051212 327 ntBASIC17.51■□□□□ 0.39
Trim28Q62318 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Trim28Q62318 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim28Q62318 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC17.51■□□□□ 0.39
Trim28Q62318 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim28Q62318 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
Trim28Q62318 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC17.51■□□□□ 0.39
Trim28Q62318 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim28Q62318 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim28Q62318 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim28Q62318 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim28Q62318 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim28Q62318 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms