Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col11a1Q61245 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col11a1Q61245 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
Col11a1Q61245 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Col11a1Q61245 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
Col11a1Q61245 Gm4864-201ENSMUST00000219894 1461 ntBASIC14.92□□□□□ -0.02
Col11a1Q61245 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col11a1Q61245 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Col11a1Q61245 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Col11a1Q61245 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC14.92□□□□□ -0.02
Col11a1Q61245 Gm3508-201ENSMUST00000186012 792 ntBASIC14.92□□□□□ -0.02
Col11a1Q61245 Gm8712-201ENSMUST00000221090 701 ntBASIC14.92□□□□□ -0.02
Col11a1Q61245 Dhrs4-202ENSMUST00000226168 828 ntBASIC14.92□□□□□ -0.02
Col11a1Q61245 C1qb-201ENSMUST00000046384 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col11a1Q61245 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col11a1Q61245 Spata48-201ENSMUST00000020410 1430 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Col11a1Q61245 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col11a1Q61245 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col11a1Q61245 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col11a1Q61245 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col11a1Q61245 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col11a1Q61245 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col11a1Q61245 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Col11a1Q61245 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col11a1Q61245 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col11a1Q61245 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col11a1Q61245 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC14.91□□□□□ -0.02
Col11a1Q61245 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC14.91□□□□□ -0.02
Col11a1Q61245 Cacng1-201ENSMUST00000021065 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col11a1Q61245 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col11a1Q61245 AC135669.1-202ENSMUST00000216742 540 ntBASIC14.91□□□□□ -0.02
Col11a1Q61245 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC14.91□□□□□ -0.02
Col11a1Q61245 Rps15-202ENSMUST00000068408 500 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col11a1Q61245 CU062626.3-201ENSMUST00000225522 1411 ntBASIC14.91□□□□□ -0.02
Col11a1Q61245 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col11a1Q61245 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Col11a1Q61245 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col11a1Q61245 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col11a1Q61245 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col11a1Q61245 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col11a1Q61245 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Col11a1Q61245 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col11a1Q61245 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col11a1Q61245 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col11a1Q61245 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col11a1Q61245 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Col11a1Q61245 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Col11a1Q61245 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col11a1Q61245 Gm6890-201ENSMUST00000114117 776 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Col11a1Q61245 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col11a1Q61245 S100a3-204ENSMUST00000200290 509 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col11a1Q61245 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
Col11a1Q61245 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
Col11a1Q61245 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col11a1Q61245 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col11a1Q61245 Il17c-201ENSMUST00000050963 719 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col11a1Q61245 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC14.9□□□□□ -0.02
Col11a1Q61245 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col11a1Q61245 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Col11a1Q61245 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col11a1Q61245 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col11a1Q61245 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Col11a1Q61245 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col11a1Q61245 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col11a1Q61245 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col11a1Q61245 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Col11a1Q61245 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col11a1Q61245 Rnf133-201ENSMUST00000063548 1308 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col11a1Q61245 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col11a1Q61245 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col11a1Q61245 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC14.9□□□□□ -0.02
Col11a1Q61245 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col11a1Q61245 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC14.89□□□□□ -0.03
Col11a1Q61245 Gm23363-201ENSMUST00000175024 79 ntBASIC14.89□□□□□ -0.03
Col11a1Q61245 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC14.89□□□□□ -0.03
Col11a1Q61245 Gm7593-201ENSMUST00000187246 644 ntBASIC14.89□□□□□ -0.03
Col11a1Q61245 Gm29961-201ENSMUST00000214692 644 ntTSL 5 BASIC14.89□□□□□ -0.03
Col11a1Q61245 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col11a1Q61245 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
Col11a1Q61245 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC14.89□□□□□ -0.03
Col11a1Q61245 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col11a1Q61245 Tmed9-203ENSMUST00000224741 1450 ntBASIC14.89□□□□□ -0.03
Col11a1Q61245 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col11a1Q61245 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Col11a1Q61245 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col11a1Q61245 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col11a1Q61245 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col11a1Q61245 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col11a1Q61245 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col11a1Q61245 Gm13736-201ENSMUST00000119272 253 ntBASIC14.89□□□□□ -0.03
Col11a1Q61245 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col11a1Q61245 Gm44136-201ENSMUST00000203819 1106 ntBASIC14.89□□□□□ -0.03
Col11a1Q61245 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Col11a1Q61245 AC154276.3-201ENSMUST00000227643 998 ntBASIC14.89□□□□□ -0.03
Col11a1Q61245 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Col11a1Q61245 Krtap5-1-201ENSMUST00000084413 588 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Col11a1Q61245 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col11a1Q61245 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col11a1Q61245 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Col11a1Q61245 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 25.9 ms