Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 AC101945.2-201ENSMUST00000227886 1377 ntBASIC20.42■□□□□ 0.86
Col17a1Q07563 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col17a1Q07563 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
Col17a1Q07563 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
Col17a1Q07563 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC20.42■□□□□ 0.86
Col17a1Q07563 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC20.42■□□□□ 0.86
Col17a1Q07563 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col17a1Q07563 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC20.42■□□□□ 0.86
Col17a1Q07563 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col17a1Q07563 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col17a1Q07563 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Col17a1Q07563 Gcg-201ENSMUST00000102733 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col17a1Q07563 Tnnt3-214ENSMUST00000105953 1049 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col17a1Q07563 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC20.42■□□□□ 0.86
Col17a1Q07563 Gm10774-201ENSMUST00000188689 204 ntBASIC20.42■□□□□ 0.86
Col17a1Q07563 Gadd45a-206ENSMUST00000204282 460 ntTSL 5 BASIC20.42■□□□□ 0.86
Col17a1Q07563 AC120394.2-201ENSMUST00000213905 702 ntTSL 5 BASIC20.42■□□□□ 0.86
Col17a1Q07563 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC20.42■□□□□ 0.86
Col17a1Q07563 Pgpep1l-201ENSMUST00000032770 953 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Col17a1Q07563 Snrpg-201ENSMUST00000089558 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col17a1Q07563 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Col17a1Q07563 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC20.42■□□□□ 0.86
Col17a1Q07563 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col17a1Q07563 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col17a1Q07563 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
Col17a1Q07563 BC037039-201ENSMUST00000192003 2205 ntBASIC20.41■□□□□ 0.86
Col17a1Q07563 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC20.41■□□□□ 0.86
Col17a1Q07563 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Col17a1Q07563 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col17a1Q07563 Smim11-202ENSMUST00000118064 782 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
Col17a1Q07563 Gm17227-202ENSMUST00000170286 1016 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Col17a1Q07563 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col17a1Q07563 Gm38092-201ENSMUST00000195600 653 ntBASIC20.41■□□□□ 0.86
Col17a1Q07563 Shisa5-205ENSMUST00000197099 742 ntTSL 3 BASIC20.41■□□□□ 0.86
Col17a1Q07563 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Col17a1Q07563 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Col17a1Q07563 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col17a1Q07563 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col17a1Q07563 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Col17a1Q07563 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col17a1Q07563 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col17a1Q07563 Cd55b-202ENSMUST00000119432 986 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Col17a1Q07563 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col17a1Q07563 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC20.4■□□□□ 0.86
Col17a1Q07563 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col17a1Q07563 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Col17a1Q07563 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col17a1Q07563 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col17a1Q07563 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col17a1Q07563 Art3-202ENSMUST00000117108 1408 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
Col17a1Q07563 Art3-203ENSMUST00000118106 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col17a1Q07563 Ankrd53-201ENSMUST00000014891 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Col17a1Q07563 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
Col17a1Q07563 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Col17a1Q07563 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
Col17a1Q07563 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col17a1Q07563 Gm15409-201ENSMUST00000135240 520 ntTSL 2 BASIC20.39■□□□□ 0.85
Col17a1Q07563 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC20.39■□□□□ 0.85
Col17a1Q07563 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Col17a1Q07563 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC20.39■□□□□ 0.85
Col17a1Q07563 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col17a1Q07563 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Col17a1Q07563 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC20.39■□□□□ 0.85
Col17a1Q07563 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col17a1Q07563 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col17a1Q07563 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col17a1Q07563 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col17a1Q07563 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col17a1Q07563 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col17a1Q07563 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Col17a1Q07563 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col17a1Q07563 Gm13182-201ENSMUST00000122241 312 ntBASIC20.38■□□□□ 0.85
Col17a1Q07563 Gm13954-201ENSMUST00000123441 543 ntTSL 3 BASIC20.38■□□□□ 0.85
Col17a1Q07563 Gm15856-201ENSMUST00000124853 1162 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Col17a1Q07563 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
Col17a1Q07563 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Col17a1Q07563 Gm43520-201ENSMUST00000197996 164 ntBASIC20.38■□□□□ 0.85
Col17a1Q07563 Gm17831-201ENSMUST00000205579 900 ntBASIC20.38■□□□□ 0.85
Col17a1Q07563 Gm11149-203ENSMUST00000215465 805 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Col17a1Q07563 Sept4-202ENSMUST00000063156 1245 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Col17a1Q07563 Cmbl-201ENSMUST00000070918 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col17a1Q07563 Gm10334-201ENSMUST00000095999 876 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col17a1Q07563 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col17a1Q07563 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col17a1Q07563 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
Col17a1Q07563 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col17a1Q07563 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC20.38■□□□□ 0.85
Col17a1Q07563 Gm42901-201ENSMUST00000197735 3171 ntBASIC20.38■□□□□ 0.85
Col17a1Q07563 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col17a1Q07563 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Col17a1Q07563 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Col17a1Q07563 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col17a1Q07563 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col17a1Q07563 Vbp1-202ENSMUST00000114070 632 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Col17a1Q07563 Dpf3-206ENSMUST00000177959 1298 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Col17a1Q07563 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col17a1Q07563 Gm2449-201ENSMUST00000180676 585 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Col17a1Q07563 Med8-201ENSMUST00000019229 1145 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col17a1Q07563 Gm3619-201ENSMUST00000219947 775 ntBASIC20.37■□□□□ 0.85
Col17a1Q07563 Orc4-202ENSMUST00000090976 1153 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 51.1 ms