Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
Col6a1Q04857 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC15.02■□□□□ -0
Col6a1Q04857 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col6a1Q04857 Gm11793-201ENSMUST00000120433 981 ntBASIC15.02■□□□□ -0
Col6a1Q04857 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col6a1Q04857 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC15.02■□□□□ -0
Col6a1Q04857 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC15.02■□□□□ -0
Col6a1Q04857 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC15.02■□□□□ -0
Col6a1Q04857 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC15.02■□□□□ -0
Col6a1Q04857 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC15.02■□□□□ -0
Col6a1Q04857 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC15.02■□□□□ -0
Col6a1Q04857 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC15.02■□□□□ -0
Col6a1Q04857 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC15.02■□□□□ -0
Col6a1Q04857 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC15.02■□□□□ -0
Col6a1Q04857 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC15.02■□□□□ -0
Col6a1Q04857 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col6a1Q04857 Snora73a-201ENSMUST00000082453 205 ntBASIC15.02■□□□□ -0
Col6a1Q04857 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col6a1Q04857 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col6a1Q04857 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col6a1Q04857 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
Col6a1Q04857 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col6a1Q04857 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col6a1Q04857 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
Col6a1Q04857 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC15.02□□□□□ -0.01
Col6a1Q04857 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col6a1Q04857 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col6a1Q04857 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col6a1Q04857 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col6a1Q04857 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col6a1Q04857 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col6a1Q04857 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col6a1Q04857 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Col6a1Q04857 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col6a1Q04857 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col6a1Q04857 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col6a1Q04857 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col6a1Q04857 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col6a1Q04857 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col6a1Q04857 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col6a1Q04857 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Col6a1Q04857 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col6a1Q04857 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Col6a1Q04857 Gm11557-201ENSMUST00000120200 1008 ntBASIC15.01□□□□□ -0.01
Col6a1Q04857 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col6a1Q04857 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC15.01□□□□□ -0.01
Col6a1Q04857 Gm8927-201ENSMUST00000181978 981 ntBASIC15.01□□□□□ -0.01
Col6a1Q04857 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC15.01□□□□□ -0.01
Col6a1Q04857 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC15.01□□□□□ -0.01
Col6a1Q04857 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC15.01□□□□□ -0.01
Col6a1Q04857 Gm18935-201ENSMUST00000212692 664 ntBASIC15.01□□□□□ -0.01
Col6a1Q04857 AC139350.3-201ENSMUST00000226151 420 ntBASIC15.01□□□□□ -0.01
Col6a1Q04857 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col6a1Q04857 Gm3222-201ENSMUST00000071282 990 ntBASIC15.01□□□□□ -0.01
Col6a1Q04857 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col6a1Q04857 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col6a1Q04857 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col6a1Q04857 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col6a1Q04857 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col6a1Q04857 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col6a1Q04857 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col6a1Q04857 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col6a1Q04857 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col6a1Q04857 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Col6a1Q04857 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC15□□□□□ -0.01
Col6a1Q04857 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Col6a1Q04857 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Col6a1Q04857 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Col6a1Q04857 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col6a1Q04857 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col6a1Q04857 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Col6a1Q04857 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col6a1Q04857 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC15□□□□□ -0.01
Col6a1Q04857 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC15□□□□□ -0.01
Col6a1Q04857 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col6a1Q04857 Adgrb2-206ENSMUST00000106018 4470 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Col6a1Q04857 Gm22323-201ENSMUST00000103832 109 ntBASIC15□□□□□ -0.01
Col6a1Q04857 Gm6152-201ENSMUST00000151704 340 ntBASIC15□□□□□ -0.01
Col6a1Q04857 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Col6a1Q04857 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC15□□□□□ -0.01
Col6a1Q04857 Gm4271-201ENSMUST00000174444 973 ntBASIC15□□□□□ -0.01
Col6a1Q04857 Gm43133-201ENSMUST00000197472 463 ntBASIC15□□□□□ -0.01
Col6a1Q04857 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC15□□□□□ -0.01
Col6a1Q04857 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
Col6a1Q04857 Gm45865-201ENSMUST00000211815 945 ntBASIC15□□□□□ -0.01
Col6a1Q04857 Gm9368-201ENSMUST00000219348 831 ntBASIC15□□□□□ -0.01
Col6a1Q04857 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC15□□□□□ -0.01
Col6a1Q04857 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC15□□□□□ -0.01
Col6a1Q04857 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col6a1Q04857 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col6a1Q04857 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Col6a1Q04857 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Col6a1Q04857 Gm10710-201ENSMUST00000047876 3971 ntBASIC15□□□□□ -0.01
Col6a1Q04857 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC15□□□□□ -0.01
Col6a1Q04857 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col6a1Q04857 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Col6a1Q04857 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col6a1Q04857 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col6a1Q04857 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col6a1Q04857 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms