Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox3P53784 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Sox3P53784 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
Sox3P53784 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox3P53784 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Sox3P53784 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox3P53784 AC154527.2-201ENSMUST00000225256 1466 ntBASIC13.06□□□□□ -0.32
Sox3P53784 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox3P53784 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox3P53784 Gm12500-202ENSMUST00000186471 2428 ntBASIC13.06□□□□□ -0.32
Sox3P53784 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox3P53784 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Sox3P53784 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Sox3P53784 Gm27731-201ENSMUST00000185192 107 ntBASIC13.06□□□□□ -0.32
Sox3P53784 Gm7446-201ENSMUST00000221035 1240 ntBASIC13.06□□□□□ -0.32
Sox3P53784 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox3P53784 AC121804.3-201ENSMUST00000223420 295 ntBASIC13.06□□□□□ -0.32
Sox3P53784 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox3P53784 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Sox3P53784 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox3P53784 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox3P53784 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox3P53784 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox3P53784 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox3P53784 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC13.06□□□□□ -0.32
Sox3P53784 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Sox3P53784 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox3P53784 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Sox3P53784 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox3P53784 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox3P53784 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Sox3P53784 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
Sox3P53784 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC13.06□□□□□ -0.32
Sox3P53784 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Sox3P53784 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox3P53784 Gm5912-201ENSMUST00000122282 1438 ntBASIC13.05□□□□□ -0.32
Sox3P53784 Gm9816-201ENSMUST00000122292 1414 ntBASIC13.05□□□□□ -0.32
Sox3P53784 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox3P53784 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Sox3P53784 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox3P53784 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox3P53784 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox3P53784 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC13.05□□□□□ -0.32
Sox3P53784 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox3P53784 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox3P53784 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Sox3P53784 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox3P53784 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox3P53784 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox3P53784 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Sox3P53784 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Sox3P53784 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox3P53784 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox3P53784 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox3P53784 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox3P53784 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC13.05□□□□□ -0.32
Sox3P53784 Gm27486-201ENSMUST00000184923 80 ntBASIC13.05□□□□□ -0.32
Sox3P53784 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox3P53784 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC13.05□□□□□ -0.32
Sox3P53784 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox3P53784 AC121805.2-201ENSMUST00000218808 2538 ntBASIC13.05□□□□□ -0.32
Sox3P53784 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox3P53784 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox3P53784 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox3P53784 Gm6198-201ENSMUST00000191337 2929 ntBASIC13.05□□□□□ -0.32
Sox3P53784 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox3P53784 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Sox3P53784 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
Sox3P53784 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox3P53784 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Sox3P53784 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox3P53784 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox3P53784 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox3P53784 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Sox3P53784 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Sox3P53784 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox3P53784 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox3P53784 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox3P53784 Hells-201ENSMUST00000025965 5868 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox3P53784 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox3P53784 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox3P53784 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox3P53784 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox3P53784 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox3P53784 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox3P53784 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox3P53784 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC13.04□□□□□ -0.32
Sox3P53784 Trav13-3-201ENSMUST00000117226 336 ntBASIC13.04□□□□□ -0.32
Sox3P53784 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC13.04□□□□□ -0.32
Sox3P53784 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC13.04□□□□□ -0.32
Sox3P53784 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Sox3P53784 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC13.04□□□□□ -0.32
Sox3P53784 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Sox3P53784 Gm33474-201ENSMUST00000199486 1231 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Sox3P53784 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox3P53784 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Sox3P53784 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC13.04□□□□□ -0.32
Sox3P53784 Pcgf5-211ENSMUST00000225920 6443 ntBASIC13.04□□□□□ -0.32
Sox3P53784 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox3P53784 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms