Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC14.39□□□□□ -0.11
Shmt1P50431 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Shmt1P50431 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Shmt1P50431 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
Shmt1P50431 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Shmt1P50431 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Shmt1P50431 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Shmt1P50431 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Shmt1P50431 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Shmt1P50431 Tmem51os1-204ENSMUST00000153023 3440 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Shmt1P50431 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Shmt1P50431 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC14.38□□□□□ -0.11
Shmt1P50431 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC14.38□□□□□ -0.11
Shmt1P50431 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Shmt1P50431 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Shmt1P50431 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC14.38□□□□□ -0.11
Shmt1P50431 Gm5276-201ENSMUST00000196683 1047 ntBASIC14.38□□□□□ -0.11
Shmt1P50431 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Shmt1P50431 Gm6983-201ENSMUST00000214912 628 ntBASIC14.38□□□□□ -0.11
Shmt1P50431 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC14.38□□□□□ -0.11
Shmt1P50431 Fuom-201ENSMUST00000026539 685 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Shmt1P50431 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Shmt1P50431 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Shmt1P50431 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Shmt1P50431 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Shmt1P50431 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Shmt1P50431 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Shmt1P50431 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Shmt1P50431 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Shmt1P50431 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Shmt1P50431 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Shmt1P50431 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Shmt1P50431 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Shmt1P50431 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Shmt1P50431 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Shmt1P50431 Gm8131-201ENSMUST00000213783 1570 ntBASIC14.38□□□□□ -0.11
Shmt1P50431 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC14.38□□□□□ -0.11
Shmt1P50431 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Shmt1P50431 Gm8775-201ENSMUST00000170943 1327 ntBASIC14.38□□□□□ -0.11
Shmt1P50431 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Shmt1P50431 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Shmt1P50431 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
Shmt1P50431 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Shmt1P50431 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Shmt1P50431 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Shmt1P50431 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Shmt1P50431 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC14.37□□□□□ -0.11
Shmt1P50431 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Shmt1P50431 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Shmt1P50431 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Shmt1P50431 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Shmt1P50431 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Shmt1P50431 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Shmt1P50431 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC14.37□□□□□ -0.11
Shmt1P50431 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Shmt1P50431 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Shmt1P50431 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Shmt1P50431 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
Shmt1P50431 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Shmt1P50431 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Shmt1P50431 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Shmt1P50431 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Shmt1P50431 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
Shmt1P50431 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC14.37□□□□□ -0.11
Shmt1P50431 Gm38223-201ENSMUST00000194484 695 ntBASIC14.37□□□□□ -0.11
Shmt1P50431 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC14.37□□□□□ -0.11
Shmt1P50431 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Shmt1P50431 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Shmt1P50431 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Shmt1P50431 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Shmt1P50431 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Shmt1P50431 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Shmt1P50431 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Shmt1P50431 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC14.37□□□□□ -0.11
Shmt1P50431 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Shmt1P50431 Acot6-202ENSMUST00000222921 3622 ntBASIC14.37□□□□□ -0.11
Shmt1P50431 AC166491.1-201ENSMUST00000227053 2308 ntBASIC14.37□□□□□ -0.11
Shmt1P50431 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Shmt1P50431 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Shmt1P50431 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shmt1P50431 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Shmt1P50431 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shmt1P50431 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shmt1P50431 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shmt1P50431 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shmt1P50431 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Shmt1P50431 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Shmt1P50431 Gm12928-201ENSMUST00000117115 573 ntBASIC14.36□□□□□ -0.11
Shmt1P50431 Gm13829-201ENSMUST00000119600 138 ntBASIC14.36□□□□□ -0.11
Shmt1P50431 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC14.36□□□□□ -0.11
Shmt1P50431 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC14.36□□□□□ -0.11
Shmt1P50431 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Shmt1P50431 Gm9002-201ENSMUST00000178437 499 ntBASIC14.36□□□□□ -0.11
Shmt1P50431 Gm42550-201ENSMUST00000201553 960 ntBASIC14.36□□□□□ -0.11
Shmt1P50431 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shmt1P50431 Gm5035-201ENSMUST00000215581 927 ntBASIC14.36□□□□□ -0.11
Shmt1P50431 AC073947.2-201ENSMUST00000215888 1130 ntBASIC14.36□□□□□ -0.11
Shmt1P50431 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shmt1P50431 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shmt1P50431 Gm3695-201ENSMUST00000087222 1009 ntBASIC14.36□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms