Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col2a1P28481 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col2a1P28481 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col2a1P28481 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col2a1P28481 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col2a1P28481 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col2a1P28481 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col2a1P28481 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col2a1P28481 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col2a1P28481 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col2a1P28481 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Col2a1P28481 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col2a1P28481 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col2a1P28481 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col2a1P28481 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col2a1P28481 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col2a1P28481 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col2a1P28481 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col2a1P28481 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col2a1P28481 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC15.23■□□□□ 0.03
Col2a1P28481 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
Col2a1P28481 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC15.23■□□□□ 0.03
Col2a1P28481 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col2a1P28481 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col2a1P28481 Gm27516-201ENSMUST00000184237 98 ntBASIC15.23■□□□□ 0.03
Col2a1P28481 1110006O24Rik-201ENSMUST00000201728 768 ntBASIC15.23■□□□□ 0.03
Col2a1P28481 Gm45437-201ENSMUST00000209998 448 ntTSL 3 BASIC15.23■□□□□ 0.03
Col2a1P28481 Gm18935-201ENSMUST00000212692 664 ntBASIC15.23■□□□□ 0.03
Col2a1P28481 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC15.23■□□□□ 0.03
Col2a1P28481 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC15.23■□□□□ 0.03
Col2a1P28481 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col2a1P28481 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col2a1P28481 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Col2a1P28481 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col2a1P28481 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col2a1P28481 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col2a1P28481 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Col2a1P28481 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col2a1P28481 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
Col2a1P28481 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC15.22■□□□□ 0.03
Col2a1P28481 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col2a1P28481 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col2a1P28481 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col2a1P28481 Gm5466-201ENSMUST00000119395 1890 ntBASIC15.22■□□□□ 0.03
Col2a1P28481 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col2a1P28481 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col2a1P28481 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
Col2a1P28481 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC15.22■□□□□ 0.03
Col2a1P28481 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC15.22■□□□□ 0.03
Col2a1P28481 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC15.22■□□□□ 0.03
Col2a1P28481 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
Col2a1P28481 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col2a1P28481 Gm37259-201ENSMUST00000193903 849 ntBASIC15.22■□□□□ 0.03
Col2a1P28481 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC15.22■□□□□ 0.03
Col2a1P28481 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC15.22■□□□□ 0.03
Col2a1P28481 Gm8227-201ENSMUST00000223306 571 ntBASIC15.22■□□□□ 0.03
Col2a1P28481 AC069562.3-201ENSMUST00000225387 587 ntBASIC15.22■□□□□ 0.03
Col2a1P28481 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC15.22■□□□□ 0.03
Col2a1P28481 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Col2a1P28481 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col2a1P28481 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Col2a1P28481 Olfr582-201ENSMUST00000098212 960 ntBASIC15.22■□□□□ 0.03
Col2a1P28481 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col2a1P28481 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col2a1P28481 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Col2a1P28481 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col2a1P28481 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Col2a1P28481 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col2a1P28481 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col2a1P28481 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col2a1P28481 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col2a1P28481 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col2a1P28481 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col2a1P28481 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Col2a1P28481 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col2a1P28481 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Col2a1P28481 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col2a1P28481 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Col2a1P28481 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Col2a1P28481 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col2a1P28481 Gm10327-201ENSMUST00000105222 1002 ntBASIC15.21■□□□□ 0.03
Col2a1P28481 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC15.21■□□□□ 0.03
Col2a1P28481 Gm7783-201ENSMUST00000204795 781 ntBASIC15.21■□□□□ 0.03
Col2a1P28481 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col2a1P28481 Gm3756-201ENSMUST00000169182 1355 ntBASIC15.21■□□□□ 0.03
Col2a1P28481 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col2a1P28481 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC15.21■□□□□ 0.03
Col2a1P28481 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col2a1P28481 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC15.21■□□□□ 0.03
Col2a1P28481 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col2a1P28481 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col2a1P28481 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col2a1P28481 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col2a1P28481 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col2a1P28481 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC15.21■□□□□ 0.03
Col2a1P28481 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col2a1P28481 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col2a1P28481 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col2a1P28481 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Col2a1P28481 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC15.21■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 65 ms