Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Sdc1P18828 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Sdc1P18828 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Sdc1P18828 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Sdc1P18828 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC11.13□□□□□ -0.63
Sdc1P18828 Phrf1-202ENSMUST00000122143 4864 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Sdc1P18828 AC122314.1-201ENSMUST00000223056 2239 ntBASIC11.13□□□□□ -0.63
Sdc1P18828 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Sdc1P18828 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC11.13□□□□□ -0.63
Sdc1P18828 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Sdc1P18828 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Sdc1P18828 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC11.13□□□□□ -0.63
Sdc1P18828 Capn2-201ENSMUST00000068505 3225 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Sdc1P18828 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Sdc1P18828 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Sdc1P18828 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
Sdc1P18828 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Sdc1P18828 Lpar1-205ENSMUST00000107575 3421 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
Sdc1P18828 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Sdc1P18828 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Sdc1P18828 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC11.12□□□□□ -0.63
Sdc1P18828 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Sdc1P18828 Gsdmcl2-203ENSMUST00000185431 1911 ntBASIC11.12□□□□□ -0.63
Sdc1P18828 Gm7935-201ENSMUST00000100555 1278 ntBASIC11.12□□□□□ -0.63
Sdc1P18828 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Sdc1P18828 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Sdc1P18828 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Sdc1P18828 Gm5479-201ENSMUST00000160578 435 ntBASIC11.12□□□□□ -0.63
Sdc1P18828 Gm16026-204ENSMUST00000162652 683 ntBASIC11.12□□□□□ -0.63
Sdc1P18828 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Sdc1P18828 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC11.12□□□□□ -0.63
Sdc1P18828 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
Sdc1P18828 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Sdc1P18828 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC11.12□□□□□ -0.63
Sdc1P18828 Gm44608-201ENSMUST00000206827 855 ntBASIC11.12□□□□□ -0.63
Sdc1P18828 AC153881.2-201ENSMUST00000214877 204 ntBASIC11.12□□□□□ -0.63
Sdc1P18828 AC154471.1-201ENSMUST00000224418 436 ntBASIC11.12□□□□□ -0.63
Sdc1P18828 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Sdc1P18828 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
Sdc1P18828 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
Sdc1P18828 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Sdc1P18828 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Sdc1P18828 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Sdc1P18828 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Sdc1P18828 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Sdc1P18828 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Sdc1P18828 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC11.12□□□□□ -0.63
Sdc1P18828 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Sdc1P18828 Gm28323-201ENSMUST00000186817 2499 ntBASIC11.12□□□□□ -0.63
Sdc1P18828 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Sdc1P18828 Eogt-201ENSMUST00000054344 4424 ntAPPRIS P2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Sdc1P18828 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Sdc1P18828 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Sdc1P18828 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
Sdc1P18828 Ppp1r10-202ENSMUST00000087211 4255 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Sdc1P18828 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Sdc1P18828 Etv3-205ENSMUST00000170036 5127 ntAPPRIS P2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Sdc1P18828 Ubxn10-203ENSMUST00000105811 2926 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Sdc1P18828 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
Sdc1P18828 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Sdc1P18828 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sdc1P18828 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sdc1P18828 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sdc1P18828 Gm13233-201ENSMUST00000118760 1443 ntBASIC11.11□□□□□ -0.63
Sdc1P18828 Gm13244-201ENSMUST00000118855 1446 ntBASIC11.11□□□□□ -0.63
Sdc1P18828 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sdc1P18828 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sdc1P18828 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Sdc1P18828 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sdc1P18828 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sdc1P18828 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sdc1P18828 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sdc1P18828 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sdc1P18828 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC11.11□□□□□ -0.63
Sdc1P18828 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sdc1P18828 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Sdc1P18828 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
Sdc1P18828 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sdc1P18828 Gm43935-201ENSMUST00000203569 1050 ntBASIC11.11□□□□□ -0.63
Sdc1P18828 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC11.11□□□□□ -0.63
Sdc1P18828 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sdc1P18828 Crat-201ENSMUST00000028207 3833 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sdc1P18828 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC11.11□□□□□ -0.63
Sdc1P18828 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sdc1P18828 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
Sdc1P18828 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Sdc1P18828 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Sdc1P18828 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC11.11□□□□□ -0.63
Sdc1P18828 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sdc1P18828 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC11.11□□□□□ -0.63
Sdc1P18828 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sdc1P18828 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sdc1P18828 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Sdc1P18828 Hltf-201ENSMUST00000002502 4955 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sdc1P18828 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
Sdc1P18828 Capn8-202ENSMUST00000168514 2483 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Sdc1P18828 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sdc1P18828 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Sdc1P18828 Zkscan14-203ENSMUST00000198959 2243 ntBASIC11.11□□□□□ -0.63
Sdc1P18828 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 39.8 ms