Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Foxl2os-201ENSMUST00000181706 3095 ntTSL 2 BASIC11.02□□□□□ -0.65
Cdx1P18111 Gga3-201ENSMUST00000019135 3816 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cdx1P18111 Otop1-202ENSMUST00000114099 3141 ntAPPRIS P5 TSL 5 BASIC11.02□□□□□ -0.65
Cdx1P18111 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cdx1P18111 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cdx1P18111 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Cdx1P18111 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cdx1P18111 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cdx1P18111 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC11.01□□□□□ -0.65
Cdx1P18111 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 CT025678.1-201ENSMUST00000214795 2972 ntBASIC11.01□□□□□ -0.65
Cdx1P18111 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 Mgat1-203ENSMUST00000109194 2480 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
Cdx1P18111 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC11.01□□□□□ -0.65
Cdx1P18111 Gm13365-201ENSMUST00000121188 973 ntBASIC11.01□□□□□ -0.65
Cdx1P18111 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC11.01□□□□□ -0.65
Cdx1P18111 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC11.01□□□□□ -0.65
Cdx1P18111 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC11.01□□□□□ -0.65
Cdx1P18111 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC11.01□□□□□ -0.65
Cdx1P18111 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 Gm44335-201ENSMUST00000196879 141 ntBASIC11.01□□□□□ -0.65
Cdx1P18111 Gm44297-201ENSMUST00000198304 141 ntBASIC11.01□□□□□ -0.65
Cdx1P18111 Gm44346-201ENSMUST00000198851 141 ntBASIC11.01□□□□□ -0.65
Cdx1P18111 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC11.01□□□□□ -0.65
Cdx1P18111 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC11.01□□□□□ -0.65
Cdx1P18111 AC139382.1-201ENSMUST00000221402 498 ntBASIC11.01□□□□□ -0.65
Cdx1P18111 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC11.01□□□□□ -0.65
Cdx1P18111 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 Gm45833-201ENSMUST00000211931 2730 ntTSL 5 BASIC11.01□□□□□ -0.65
Cdx1P18111 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC11.01□□□□□ -0.65
Cdx1P18111 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC11.01□□□□□ -0.65
Cdx1P18111 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 Asxl1-205ENSMUST00000227428 6981 ntAPPRIS ALT2 BASIC11.01□□□□□ -0.65
Cdx1P18111 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 Gm13332-201ENSMUST00000120451 1398 ntBASIC11.01□□□□□ -0.65
Cdx1P18111 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC11.01□□□□□ -0.65
Cdx1P18111 Olfr648-202ENSMUST00000216612 2929 ntAPPRIS P1 TSL 2 BASIC11.01□□□□□ -0.65
Cdx1P18111 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 Cacna2d1-202ENSMUST00000078272 7311 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdx1P18111 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC11□□□□□ -0.65
Cdx1P18111 AC157650.3-201ENSMUST00000225058 1476 ntBASIC11□□□□□ -0.65
Cdx1P18111 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC11□□□□□ -0.65
Cdx1P18111 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx1P18111 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx1P18111 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC11□□□□□ -0.65
Cdx1P18111 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx1P18111 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx1P18111 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC11□□□□□ -0.65
Cdx1P18111 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx1P18111 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC11□□□□□ -0.65
Cdx1P18111 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx1P18111 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC11□□□□□ -0.65
Cdx1P18111 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC11□□□□□ -0.65
Cdx1P18111 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx1P18111 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC11□□□□□ -0.65
Cdx1P18111 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC11□□□□□ -0.65
Cdx1P18111 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC11□□□□□ -0.65
Cdx1P18111 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC11□□□□□ -0.65
Cdx1P18111 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
Cdx1P18111 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC11□□□□□ -0.65
Cdx1P18111 AC155729.1-201ENSMUST00000227758 544 ntBASIC11□□□□□ -0.65
Cdx1P18111 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC11□□□□□ -0.65
Cdx1P18111 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx1P18111 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx1P18111 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx1P18111 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx1P18111 Kif13b-201ENSMUST00000100473 5603 ntAPPRIS P2 TSL 5 BASIC11□□□□□ -0.65
Cdx1P18111 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC11□□□□□ -0.65
Cdx1P18111 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx1P18111 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx1P18111 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx1P18111 Gm13722-201ENSMUST00000117964 3066 ntBASIC11□□□□□ -0.65
Cdx1P18111 Tbc1d2-201ENSMUST00000084621 4315 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx1P18111 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Cdx1P18111 St6galnac6-201ENSMUST00000072111 2277 ntAPPRIS P3 TSL 5 BASIC11□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 53.6 ms