Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col5a1O88207 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col5a1O88207 AC139350.1-201ENSMUST00000227064 1594 ntBASIC12.1□□□□□ -0.47
Col5a1O88207 AC166491.1-201ENSMUST00000227053 2308 ntBASIC12.1□□□□□ -0.47
Col5a1O88207 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC12.1□□□□□ -0.47
Col5a1O88207 Gm14752-201ENSMUST00000120719 2075 ntBASIC12.1□□□□□ -0.47
Col5a1O88207 Gm2237-202ENSMUST00000170694 2090 ntAPPRIS P5 TSL 5 BASIC12.1□□□□□ -0.47
Col5a1O88207 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC12.1□□□□□ -0.47
Col5a1O88207 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col5a1O88207 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col5a1O88207 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col5a1O88207 Efs-201ENSMUST00000022813 2705 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col5a1O88207 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC12.1□□□□□ -0.47
Col5a1O88207 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col5a1O88207 Ndufs5-203ENSMUST00000106207 680 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col5a1O88207 Rbm3-202ENSMUST00000115615 1183 ntAPPRIS ALT1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col5a1O88207 Rbm3-203ENSMUST00000115616 1225 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col5a1O88207 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col5a1O88207 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col5a1O88207 Mir1943-201ENSMUST00000158276 73 ntBASIC12.1□□□□□ -0.47
Col5a1O88207 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col5a1O88207 Gm3890-201ENSMUST00000182416 207 ntBASIC12.1□□□□□ -0.47
Col5a1O88207 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC12.1□□□□□ -0.47
Col5a1O88207 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC12.1□□□□□ -0.47
Col5a1O88207 Gm45437-201ENSMUST00000209998 448 ntTSL 3 BASIC12.1□□□□□ -0.47
Col5a1O88207 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC12.1□□□□□ -0.47
Col5a1O88207 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col5a1O88207 Ndufs5-201ENSMUST00000030401 525 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col5a1O88207 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col5a1O88207 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col5a1O88207 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
Col5a1O88207 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Col5a1O88207 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col5a1O88207 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC12.1□□□□□ -0.47
Col5a1O88207 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col5a1O88207 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col5a1O88207 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col5a1O88207 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Col5a1O88207 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col5a1O88207 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col5a1O88207 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col5a1O88207 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col5a1O88207 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col5a1O88207 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Col5a1O88207 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC12.09□□□□□ -0.47
Col5a1O88207 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col5a1O88207 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col5a1O88207 Sumo2-203ENSMUST00000117589 987 ntTSL 3 BASIC12.09□□□□□ -0.47
Col5a1O88207 Gm14208-201ENSMUST00000119645 678 ntBASIC12.09□□□□□ -0.47
Col5a1O88207 Gm11331-201ENSMUST00000119764 288 ntBASIC12.09□□□□□ -0.47
Col5a1O88207 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col5a1O88207 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col5a1O88207 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col5a1O88207 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col5a1O88207 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col5a1O88207 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Col5a1O88207 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col5a1O88207 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Col5a1O88207 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC12.09□□□□□ -0.47
Col5a1O88207 Gm18244-201ENSMUST00000219747 1566 ntBASIC12.09□□□□□ -0.47
Col5a1O88207 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col5a1O88207 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Col5a1O88207 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col5a1O88207 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col5a1O88207 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col5a1O88207 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col5a1O88207 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col5a1O88207 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col5a1O88207 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Col5a1O88207 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col5a1O88207 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Col5a1O88207 Mmp14-206ENSMUST00000225641 3238 ntBASIC12.09□□□□□ -0.47
Col5a1O88207 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Col5a1O88207 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC12.09□□□□□ -0.47
Col5a1O88207 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
Col5a1O88207 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC12.09□□□□□ -0.47
Col5a1O88207 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC12.09□□□□□ -0.47
Col5a1O88207 Gm37388-201ENSMUST00000193984 429 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Col5a1O88207 C230062I16Rik-204ENSMUST00000208342 643 ntTSL 3 BASIC12.09□□□□□ -0.47
Col5a1O88207 1700112L15Rik-201ENSMUST00000212067 510 ntBASIC12.09□□□□□ -0.47
Col5a1O88207 Gm19208-201ENSMUST00000213861 912 ntBASIC12.09□□□□□ -0.47
Col5a1O88207 AC122305.4-201ENSMUST00000216159 1206 ntBASIC12.09□□□□□ -0.47
Col5a1O88207 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Col5a1O88207 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Col5a1O88207 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Col5a1O88207 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC12.08□□□□□ -0.47
Col5a1O88207 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
Col5a1O88207 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
Col5a1O88207 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC12.08□□□□□ -0.47
Col5a1O88207 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
Col5a1O88207 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Col5a1O88207 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Col5a1O88207 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC12.08□□□□□ -0.48
Col5a1O88207 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col5a1O88207 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col5a1O88207 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Col5a1O88207 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC12.08□□□□□ -0.48
Col5a1O88207 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col5a1O88207 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col5a1O88207 Gm11591-201ENSMUST00000120063 702 ntBASIC12.08□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 60.5 ms