Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Pcdh1F7BJK1 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC12.27□□□□□ -0.45
Pcdh1F7BJK1 Gm4971-201ENSMUST00000205991 1108 ntBASIC12.27□□□□□ -0.45
Pcdh1F7BJK1 AC154532.1-201ENSMUST00000227860 965 ntBASIC12.27□□□□□ -0.45
Pcdh1F7BJK1 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Pcdh1F7BJK1 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Pcdh1F7BJK1 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Pcdh1F7BJK1 Gm15500-202ENSMUST00000071641 1019 ntBASIC12.27□□□□□ -0.45
Pcdh1F7BJK1 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Pcdh1F7BJK1 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC12.27□□□□□ -0.45
Pcdh1F7BJK1 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Pcdh1F7BJK1 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Pcdh1F7BJK1 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Pcdh1F7BJK1 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Pcdh1F7BJK1 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Pcdh1F7BJK1 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Pcdh1F7BJK1 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Pcdh1F7BJK1 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Pcdh1F7BJK1 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Pcdh1F7BJK1 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
Pcdh1F7BJK1 Gm42748-201ENSMUST00000199354 2341 ntBASIC12.27□□□□□ -0.45
Pcdh1F7BJK1 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
Pcdh1F7BJK1 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Pcdh1F7BJK1 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Pcdh1F7BJK1 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Pcdh1F7BJK1 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Pcdh1F7BJK1 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC12.27□□□□□ -0.45
Pcdh1F7BJK1 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Pcdh1F7BJK1 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Pcdh1F7BJK1 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 H2af-ps-201ENSMUST00000119066 295 ntBASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Gm27494-201ENSMUST00000184735 189 ntBASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Ighv1-51-201ENSMUST00000192903 354 ntBASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Gm18049-201ENSMUST00000208909 581 ntBASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Ntrk2-204ENSMUST00000224259 3049 ntBASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC12.26□□□□□ -0.45
Pcdh1F7BJK1 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Pcdh1F7BJK1 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Pcdh1F7BJK1 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Pcdh1F7BJK1 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Pcdh1F7BJK1 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Pcdh1F7BJK1 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Pcdh1F7BJK1 Ildr2-201ENSMUST00000111416 8251 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Pcdh1F7BJK1 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Pcdh1F7BJK1 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Pcdh1F7BJK1 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Pcdh1F7BJK1 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Pcdh1F7BJK1 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Pcdh1F7BJK1 Slc22a15-201ENSMUST00000106928 6573 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Pcdh1F7BJK1 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Pcdh1F7BJK1 Gm5566-201ENSMUST00000116118 459 ntBASIC12.25□□□□□ -0.45
Pcdh1F7BJK1 Gm11745-201ENSMUST00000121669 448 ntBASIC12.25□□□□□ -0.45
Pcdh1F7BJK1 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Pcdh1F7BJK1 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Pcdh1F7BJK1 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC12.25□□□□□ -0.45
Pcdh1F7BJK1 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Pcdh1F7BJK1 CT943659.1-201ENSMUST00000215459 326 ntBASIC12.25□□□□□ -0.45
Pcdh1F7BJK1 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC12.25□□□□□ -0.45
Pcdh1F7BJK1 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Pcdh1F7BJK1 AC225888.1-201ENSMUST00000227184 728 ntBASIC12.25□□□□□ -0.45
Pcdh1F7BJK1 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Pcdh1F7BJK1 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Pcdh1F7BJK1 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Pcdh1F7BJK1 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms