Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lsm1Q8VC85 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lsm1Q8VC85 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lsm1Q8VC85 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Lsm1Q8VC85 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Lsm1Q8VC85 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Lsm1Q8VC85 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lsm1Q8VC85 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lsm1Q8VC85 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lsm1Q8VC85 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lsm1Q8VC85 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Lsm1Q8VC85 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lsm1Q8VC85 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Lsm1Q8VC85 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lsm1Q8VC85 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lsm1Q8VC85 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC13.11□□□□□ -0.31
Lsm1Q8VC85 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 AC168058.1-201ENSMUST00000219521 2282 ntBASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Gm15393-201ENSMUST00000120499 219 ntBASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Gm4804-201ENSMUST00000182234 999 ntBASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Gm10766-202ENSMUST00000194123 606 ntBASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 AC131997.1-201ENSMUST00000228611 1229 ntBASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Gm8396-201ENSMUST00000057361 823 ntBASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Gypa-201ENSMUST00000063359 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Lsm1Q8VC85 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 AC132104.2-201ENSMUST00000215011 266 ntBASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Rbfox2-208ENSMUST00000227930 1218 ntBASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Frzb-201ENSMUST00000028389 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Gm9947-201ENSMUST00000067599 2920 ntBASIC13.09□□□□□ -0.31
Lsm1Q8VC85 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Lsm1Q8VC85 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Lsm1Q8VC85 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.31
Lsm1Q8VC85 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 37.1 ms