Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Gm11557-201ENSMUST00000120200 1008 ntBASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Gm17150-201ENSMUST00000165577 381 ntBASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Gm8927-201ENSMUST00000181978 981 ntBASIC15.3■□□□□ 0.04
Ushbp1Q8R370 AC155286.1-201ENSMUST00000218632 448 ntBASIC15.3■□□□□ 0.04
Ushbp1Q8R370 AC154595.3-201ENSMUST00000224579 384 ntBASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
Ushbp1Q8R370 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Gm3222-201ENSMUST00000071282 990 ntBASIC15.3■□□□□ 0.04
Ushbp1Q8R370 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Gm45779-201ENSMUST00000212189 4064 ntBASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Ushbp1Q8R370 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ushbp1Q8R370 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
Ushbp1Q8R370 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ushbp1Q8R370 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ushbp1Q8R370 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ushbp1Q8R370 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ushbp1Q8R370 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ushbp1Q8R370 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ushbp1Q8R370 Gm37691-201ENSMUST00000192147 2573 ntBASIC15.29■□□□□ 0.04
Ushbp1Q8R370 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
Ushbp1Q8R370 Gm15806-201ENSMUST00000120696 955 ntBASIC15.29■□□□□ 0.04
Ushbp1Q8R370 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC15.29■□□□□ 0.04
Ushbp1Q8R370 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC15.29■□□□□ 0.04
Ushbp1Q8R370 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
Ushbp1Q8R370 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
Ushbp1Q8R370 Mir1938-201ENSMUST00000158746 100 ntBASIC15.29■□□□□ 0.04
Ushbp1Q8R370 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC15.29■□□□□ 0.04
Ushbp1Q8R370 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC15.29■□□□□ 0.04
Ushbp1Q8R370 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ushbp1Q8R370 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Ushbp1Q8R370 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ushbp1Q8R370 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ushbp1Q8R370 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ushbp1Q8R370 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ushbp1Q8R370 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ushbp1Q8R370 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Ushbp1Q8R370 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ushbp1Q8R370 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ushbp1Q8R370 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ushbp1Q8R370 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ushbp1Q8R370 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ushbp1Q8R370 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC15.28■□□□□ 0.04
Ushbp1Q8R370 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Ushbp1Q8R370 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ushbp1Q8R370 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
Ushbp1Q8R370 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ushbp1Q8R370 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ushbp1Q8R370 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Ushbp1Q8R370 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ushbp1Q8R370 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ushbp1Q8R370 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ushbp1Q8R370 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ushbp1Q8R370 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ushbp1Q8R370 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC15.28■□□□□ 0.04
Ushbp1Q8R370 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC15.28■□□□□ 0.04
Ushbp1Q8R370 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Ushbp1Q8R370 AC159006.1-201ENSMUST00000226396 258 ntBASIC15.28■□□□□ 0.04
Ushbp1Q8R370 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC15.28■□□□□ 0.04
Ushbp1Q8R370 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Ushbp1Q8R370 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ushbp1Q8R370 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ushbp1Q8R370 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ushbp1Q8R370 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ushbp1Q8R370 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ushbp1Q8R370 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ushbp1Q8R370 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC15.28■□□□□ 0.04
Ushbp1Q8R370 Ksr1-207ENSMUST00000226282 5260 ntBASIC15.28■□□□□ 0.04
Ushbp1Q8R370 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ushbp1Q8R370 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ushbp1Q8R370 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
Ushbp1Q8R370 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ushbp1Q8R370 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ushbp1Q8R370 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC15.27■□□□□ 0.04
Ushbp1Q8R370 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ushbp1Q8R370 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ushbp1Q8R370 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC15.27■□□□□ 0.04
Ushbp1Q8R370 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Ushbp1Q8R370 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Ushbp1Q8R370 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Ushbp1Q8R370 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Ushbp1Q8R370 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Ushbp1Q8R370 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ushbp1Q8R370 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC15.27■□□□□ 0.04
Ushbp1Q8R370 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 73.1 ms