Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Syne4Q8CII8 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Syne4Q8CII8 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC15.36■□□□□ 0.05
Syne4Q8CII8 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Syne4Q8CII8 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Syne4Q8CII8 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
Syne4Q8CII8 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Syne4Q8CII8 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Syne4Q8CII8 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
Syne4Q8CII8 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Syne4Q8CII8 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Syne4Q8CII8 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Syne4Q8CII8 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Syne4Q8CII8 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Syne4Q8CII8 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Syne4Q8CII8 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Syne4Q8CII8 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Syne4Q8CII8 Gm12020-201ENSMUST00000119030 2042 ntBASIC15.35■□□□□ 0.05
Syne4Q8CII8 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Syne4Q8CII8 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Syne4Q8CII8 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC15.35■□□□□ 0.05
Syne4Q8CII8 Gm16202-201ENSMUST00000117532 544 ntBASIC15.35■□□□□ 0.05
Syne4Q8CII8 Gm12997-201ENSMUST00000120207 640 ntBASIC15.35■□□□□ 0.05
Syne4Q8CII8 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Syne4Q8CII8 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC15.35■□□□□ 0.05
Syne4Q8CII8 Gm4819-201ENSMUST00000182170 1009 ntBASIC15.35■□□□□ 0.05
Syne4Q8CII8 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
Syne4Q8CII8 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC15.35■□□□□ 0.05
Syne4Q8CII8 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
Syne4Q8CII8 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
Syne4Q8CII8 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC15.35■□□□□ 0.05
Syne4Q8CII8 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Syne4Q8CII8 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Syne4Q8CII8 Gm18244-201ENSMUST00000219747 1566 ntBASIC15.35■□□□□ 0.05
Syne4Q8CII8 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Syne4Q8CII8 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Syne4Q8CII8 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
Syne4Q8CII8 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Syne4Q8CII8 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Syne4Q8CII8 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
Syne4Q8CII8 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
Syne4Q8CII8 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Syne4Q8CII8 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Syne4Q8CII8 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Syne4Q8CII8 Gm10605-202ENSMUST00000183019 3198 ntBASIC15.34■□□□□ 0.05
Syne4Q8CII8 Ap5m1-205ENSMUST00000227431 3757 ntBASIC15.34■□□□□ 0.05
Syne4Q8CII8 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Syne4Q8CII8 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Syne4Q8CII8 Gm12500-202ENSMUST00000186471 2428 ntBASIC15.34■□□□□ 0.05
Syne4Q8CII8 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC15.34■□□□□ 0.05
Syne4Q8CII8 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC15.34■□□□□ 0.05
Syne4Q8CII8 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Syne4Q8CII8 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Syne4Q8CII8 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Syne4Q8CII8 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Syne4Q8CII8 Gm9431-201ENSMUST00000119765 1051 ntBASIC15.34■□□□□ 0.05
Syne4Q8CII8 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Syne4Q8CII8 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC15.34■□□□□ 0.05
Syne4Q8CII8 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Syne4Q8CII8 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Syne4Q8CII8 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Syne4Q8CII8 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Syne4Q8CII8 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
Syne4Q8CII8 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Syne4Q8CII8 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Syne4Q8CII8 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Syne4Q8CII8 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Syne4Q8CII8 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Syne4Q8CII8 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
Syne4Q8CII8 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Syne4Q8CII8 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Syne4Q8CII8 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Syne4Q8CII8 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Syne4Q8CII8 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
Syne4Q8CII8 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Syne4Q8CII8 Gm14608-201ENSMUST00000120030 1553 ntBASIC15.33■□□□□ 0.05
Syne4Q8CII8 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Syne4Q8CII8 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC15.33■□□□□ 0.04
Syne4Q8CII8 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Syne4Q8CII8 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC15.33■□□□□ 0.04
Syne4Q8CII8 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC15.33■□□□□ 0.04
Syne4Q8CII8 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Syne4Q8CII8 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC15.33■□□□□ 0.04
Syne4Q8CII8 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC15.33■□□□□ 0.04
Syne4Q8CII8 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Syne4Q8CII8 AC022775.2-201ENSMUST00000227885 646 ntBASIC15.33■□□□□ 0.04
Syne4Q8CII8 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC15.33■□□□□ 0.04
Syne4Q8CII8 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Syne4Q8CII8 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
Syne4Q8CII8 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC15.33■□□□□ 0.04
Syne4Q8CII8 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Syne4Q8CII8 Gm8793-201ENSMUST00000183069 1303 ntBASIC15.33■□□□□ 0.04
Syne4Q8CII8 Gm45765-202ENSMUST00000212921 1313 ntTSL 5 BASIC15.33■□□□□ 0.04
Syne4Q8CII8 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Syne4Q8CII8 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Syne4Q8CII8 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Syne4Q8CII8 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC15.33■□□□□ 0.04
Syne4Q8CII8 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Syne4Q8CII8 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Syne4Q8CII8 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms