Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp47Q8BY87 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp47Q8BY87 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC19.15■□□□□ 0.66
Usp47Q8BY87 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Usp47Q8BY87 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Usp47Q8BY87 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC19.15■□□□□ 0.66
Usp47Q8BY87 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp47Q8BY87 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp47Q8BY87 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp47Q8BY87 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp47Q8BY87 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp47Q8BY87 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Usp47Q8BY87 AC096628.2-201ENSMUST00000225443 1413 ntBASIC19.15■□□□□ 0.66
Usp47Q8BY87 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp47Q8BY87 Mettl26-203ENSMUST00000163356 534 ntTSL 5 BASIC19.15■□□□□ 0.66
Usp47Q8BY87 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Usp47Q8BY87 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC19.15■□□□□ 0.66
Usp47Q8BY87 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp47Q8BY87 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp47Q8BY87 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp47Q8BY87 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Usp47Q8BY87 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC19.15■□□□□ 0.66
Usp47Q8BY87 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp47Q8BY87 Gm2420-202ENSMUST00000202224 2249 ntBASIC19.14■□□□□ 0.66
Usp47Q8BY87 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Usp47Q8BY87 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Usp47Q8BY87 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp47Q8BY87 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp47Q8BY87 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Usp47Q8BY87 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Usp47Q8BY87 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp47Q8BY87 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp47Q8BY87 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp47Q8BY87 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp47Q8BY87 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp47Q8BY87 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Usp47Q8BY87 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Usp47Q8BY87 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp47Q8BY87 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Usp47Q8BY87 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC19.14■□□□□ 0.65
Usp47Q8BY87 Gm27331-201ENSMUST00000183705 60 ntBASIC19.14■□□□□ 0.65
Usp47Q8BY87 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC19.14■□□□□ 0.65
Usp47Q8BY87 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC19.14■□□□□ 0.65
Usp47Q8BY87 Gm18062-201ENSMUST00000208020 547 ntBASIC19.14■□□□□ 0.65
Usp47Q8BY87 Gm18055-201ENSMUST00000208254 547 ntBASIC19.14■□□□□ 0.65
Usp47Q8BY87 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Usp47Q8BY87 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
Usp47Q8BY87 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Usp47Q8BY87 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Usp47Q8BY87 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC19.14■□□□□ 0.65
Usp47Q8BY87 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Usp47Q8BY87 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp47Q8BY87 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp47Q8BY87 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp47Q8BY87 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp47Q8BY87 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp47Q8BY87 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC19.13■□□□□ 0.65
Usp47Q8BY87 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp47Q8BY87 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp47Q8BY87 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp47Q8BY87 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp47Q8BY87 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp47Q8BY87 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Usp47Q8BY87 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp47Q8BY87 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC19.13■□□□□ 0.65
Usp47Q8BY87 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Usp47Q8BY87 Gm22331-201ENSMUST00000158066 136 ntBASIC19.13■□□□□ 0.65
Usp47Q8BY87 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC19.13■□□□□ 0.65
Usp47Q8BY87 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Usp47Q8BY87 CT573086.1-201ENSMUST00000227202 1074 ntBASIC19.13■□□□□ 0.65
Usp47Q8BY87 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp47Q8BY87 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Usp47Q8BY87 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC19.13■□□□□ 0.65
Usp47Q8BY87 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Usp47Q8BY87 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Usp47Q8BY87 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp47Q8BY87 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Usp47Q8BY87 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp47Q8BY87 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp47Q8BY87 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Usp47Q8BY87 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC19.12■□□□□ 0.65
Usp47Q8BY87 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp47Q8BY87 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp47Q8BY87 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Usp47Q8BY87 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp47Q8BY87 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Usp47Q8BY87 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Usp47Q8BY87 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Usp47Q8BY87 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Usp47Q8BY87 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp47Q8BY87 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Usp47Q8BY87 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp47Q8BY87 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp47Q8BY87 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp47Q8BY87 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp47Q8BY87 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp47Q8BY87 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Usp47Q8BY87 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp47Q8BY87 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp47Q8BY87 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms