Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
Trim28Q62318 Gm45331-201ENSMUST00000209868 554 ntBASIC17.57■□□□□ 0.4
Trim28Q62318 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC17.57■□□□□ 0.4
Trim28Q62318 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim28Q62318 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trim28Q62318 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim28Q62318 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trim28Q62318 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim28Q62318 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim28Q62318 Ptprs-211ENSMUST00000223859 5588 ntBASIC17.57■□□□□ 0.4
Trim28Q62318 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim28Q62318 Gm5639-201ENSMUST00000122305 2403 ntBASIC17.57■□□□□ 0.4
Trim28Q62318 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim28Q62318 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim28Q62318 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trim28Q62318 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim28Q62318 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim28Q62318 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim28Q62318 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim28Q62318 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim28Q62318 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim28Q62318 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim28Q62318 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trim28Q62318 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Trim28Q62318 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trim28Q62318 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim28Q62318 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
Trim28Q62318 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC17.56■□□□□ 0.4
Trim28Q62318 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trim28Q62318 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC17.56■□□□□ 0.4
Trim28Q62318 Gm32926-201ENSMUST00000214043 681 ntTSL 3 BASIC17.56■□□□□ 0.4
Trim28Q62318 CU024892.2-201ENSMUST00000224608 832 ntBASIC17.56■□□□□ 0.4
Trim28Q62318 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim28Q62318 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC17.56■□□□□ 0.4
Trim28Q62318 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim28Q62318 Gm14608-201ENSMUST00000120030 1553 ntBASIC17.56■□□□□ 0.4
Trim28Q62318 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim28Q62318 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim28Q62318 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim28Q62318 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim28Q62318 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim28Q62318 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim28Q62318 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC17.56■□□□□ 0.4
Trim28Q62318 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim28Q62318 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Trim28Q62318 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Trim28Q62318 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Trim28Q62318 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim28Q62318 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim28Q62318 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Trim28Q62318 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim28Q62318 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim28Q62318 Gm10710-201ENSMUST00000047876 3971 ntBASIC17.55■□□□□ 0.4
Trim28Q62318 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Trim28Q62318 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
Trim28Q62318 Gm11637-201ENSMUST00000120601 592 ntBASIC17.55■□□□□ 0.4
Trim28Q62318 Gm6161-201ENSMUST00000121942 1102 ntBASIC17.55■□□□□ 0.4
Trim28Q62318 Gm2231-201ENSMUST00000125661 612 ntBASIC17.55■□□□□ 0.4
Trim28Q62318 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Trim28Q62318 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim28Q62318 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Trim28Q62318 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Trim28Q62318 Gm6254-201ENSMUST00000168178 1072 ntBASIC17.55■□□□□ 0.4
Trim28Q62318 Gm6153-201ENSMUST00000172004 1058 ntBASIC17.55■□□□□ 0.4
Trim28Q62318 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Trim28Q62318 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
Trim28Q62318 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim28Q62318 Gm19184-201ENSMUST00000196798 928 ntBASIC17.55■□□□□ 0.4
Trim28Q62318 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC17.55■□□□□ 0.4
Trim28Q62318 Gm5641-202ENSMUST00000198699 1080 ntBASIC17.55■□□□□ 0.4
Trim28Q62318 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim28Q62318 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim28Q62318 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim28Q62318 Olfr983-201ENSMUST00000050996 1050 ntTSL 2 BASIC17.55■□□□□ 0.4
Trim28Q62318 Olfr54-201ENSMUST00000072152 942 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Trim28Q62318 Olfr1375-201ENSMUST00000073543 942 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Trim28Q62318 Gm43423-201ENSMUST00000198390 2094 ntBASIC17.55■□□□□ 0.4
Trim28Q62318 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim28Q62318 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Trim28Q62318 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim28Q62318 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim28Q62318 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC17.55■□□□□ 0.4
Trim28Q62318 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim28Q62318 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Trim28Q62318 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim28Q62318 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim28Q62318 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim28Q62318 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim28Q62318 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim28Q62318 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Trim28Q62318 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Trim28Q62318 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Trim28Q62318 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC17.54■□□□□ 0.4
Trim28Q62318 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim28Q62318 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim28Q62318 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Trim28Q62318 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim28Q62318 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Trim28Q62318 Gm28693-202ENSMUST00000190758 331 ntBASIC17.54■□□□□ 0.4
Trim28Q62318 AC134254.1-201ENSMUST00000221362 167 ntBASIC17.54■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 40.8 ms