Protein–RNA interactions for Protein: Q61371

Ift88, Intraflagellar transport protein 88 homolog, mousemouse

Predictions only

Length 824 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ift88Q61371 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ift88Q61371 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Ift88Q61371 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Ift88Q61371 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Ift88Q61371 CT025610.1-201ENSMUST00000224552 1786 ntBASIC15.11■□□□□ 0.01
Ift88Q61371 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ift88Q61371 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ift88Q61371 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Ift88Q61371 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Ift88Q61371 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ift88Q61371 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
Ift88Q61371 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC15.1■□□□□ 0.01
Ift88Q61371 Arid3a-201ENSMUST00000019708 5361 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ift88Q61371 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ift88Q61371 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ift88Q61371 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
Ift88Q61371 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ift88Q61371 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ift88Q61371 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC15.1■□□□□ 0.01
Ift88Q61371 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ift88Q61371 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ift88Q61371 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Ift88Q61371 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC15.1■□□□□ 0.01
Ift88Q61371 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC15.1■□□□□ 0.01
Ift88Q61371 Gm15460-201ENSMUST00000118147 391 ntBASIC15.1■□□□□ 0.01
Ift88Q61371 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ift88Q61371 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC15.1■□□□□ 0.01
Ift88Q61371 Gm24158-201ENSMUST00000175263 71 ntBASIC15.1■□□□□ 0.01
Ift88Q61371 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC15.1■□□□□ 0.01
Ift88Q61371 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC15.1■□□□□ 0.01
Ift88Q61371 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ift88Q61371 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ift88Q61371 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC15.1■□□□□ 0.01
Ift88Q61371 AC156016.3-201ENSMUST00000228623 344 ntBASIC15.1■□□□□ 0.01
Ift88Q61371 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ift88Q61371 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ift88Q61371 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ift88Q61371 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ift88Q61371 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ift88Q61371 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ift88Q61371 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Ift88Q61371 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC15.1■□□□□ 0.01
Ift88Q61371 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ift88Q61371 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ift88Q61371 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ift88Q61371 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ift88Q61371 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Ift88Q61371 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Ift88Q61371 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ift88Q61371 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ift88Q61371 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ift88Q61371 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ift88Q61371 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ift88Q61371 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Ift88Q61371 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC15.09■□□□□ 0.01
Ift88Q61371 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ift88Q61371 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Ift88Q61371 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ift88Q61371 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ift88Q61371 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ift88Q61371 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC15.09■□□□□ 0.01
Ift88Q61371 Gm21470-201ENSMUST00000187680 696 ntBASIC15.09■□□□□ 0.01
Ift88Q61371 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Ift88Q61371 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ift88Q61371 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
Ift88Q61371 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ift88Q61371 Il4ra-201ENSMUST00000033004 5256 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ift88Q61371 Gm5648-201ENSMUST00000122244 1587 ntBASIC15.09■□□□□ 0.01
Ift88Q61371 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ift88Q61371 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ift88Q61371 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ift88Q61371 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ift88Q61371 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ift88Q61371 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ift88Q61371 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC15.09■□□□□ 0.01
Ift88Q61371 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ift88Q61371 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ift88Q61371 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
Ift88Q61371 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Ift88Q61371 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ift88Q61371 Gm7899-201ENSMUST00000192935 1897 ntBASIC15.08■□□□□ 0.01
Ift88Q61371 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ift88Q61371 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC15.08■□□□□ 0
Ift88Q61371 AC139350.1-201ENSMUST00000227064 1594 ntBASIC15.08■□□□□ 0
Ift88Q61371 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ift88Q61371 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ift88Q61371 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ift88Q61371 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ift88Q61371 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Ift88Q61371 Mir1897-201ENSMUST00000122581 272 ntBASIC15.08■□□□□ 0
Ift88Q61371 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC15.08■□□□□ 0
Ift88Q61371 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC15.08■□□□□ 0
Ift88Q61371 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ift88Q61371 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Ift88Q61371 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ift88Q61371 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ift88Q61371 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ift88Q61371 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Ift88Q61371 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ift88Q61371 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC15.08■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 39.1 ms