Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Mir6977-201ENSMUST00000184960 64 ntBASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 AC153366.2-201ENSMUST00000219461 1984 ntBASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
Col28a1Q2UY11 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC13.27□□□□□ -0.28
Col28a1Q2UY11 Ssr1-203ENSMUST00000225246 1825 ntBASIC13.27□□□□□ -0.28
Col28a1Q2UY11 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Col28a1Q2UY11 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Col28a1Q2UY11 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
Col28a1Q2UY11 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC13.27□□□□□ -0.28
Col28a1Q2UY11 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
Col28a1Q2UY11 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Col28a1Q2UY11 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Col28a1Q2UY11 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Col28a1Q2UY11 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Col28a1Q2UY11 Gm10327-201ENSMUST00000105222 1002 ntBASIC13.27□□□□□ -0.29
Col28a1Q2UY11 Gm7336-201ENSMUST00000107041 1232 ntBASIC13.27□□□□□ -0.29
Col28a1Q2UY11 Gm15957-201ENSMUST00000118893 974 ntBASIC13.27□□□□□ -0.29
Col28a1Q2UY11 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Col28a1Q2UY11 Gm12017-201ENSMUST00000122453 1003 ntBASIC13.27□□□□□ -0.29
Col28a1Q2UY11 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC13.27□□□□□ -0.29
Col28a1Q2UY11 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Col28a1Q2UY11 Gm5069-202ENSMUST00000192714 1011 ntBASIC13.27□□□□□ -0.29
Col28a1Q2UY11 Gm5779-201ENSMUST00000218467 910 ntBASIC13.27□□□□□ -0.29
Col28a1Q2UY11 Arhgef33-209ENSMUST00000225223 714 ntBASIC13.27□□□□□ -0.29
Col28a1Q2UY11 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Col28a1Q2UY11 AC159621.2-201ENSMUST00000223519 1326 ntBASIC13.27□□□□□ -0.29
Col28a1Q2UY11 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Col28a1Q2UY11 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Col28a1Q2UY11 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Col28a1Q2UY11 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Col28a1Q2UY11 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Col28a1Q2UY11 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Col28a1Q2UY11 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Col28a1Q2UY11 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Col28a1Q2UY11 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
Col28a1Q2UY11 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Col28a1Q2UY11 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC13.27□□□□□ -0.29
Col28a1Q2UY11 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Col28a1Q2UY11 Armc8-201ENSMUST00000035043 4647 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Col28a1Q2UY11 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 AC131710.1-201ENSMUST00000228336 990 ntBASIC13.26□□□□□ -0.29
Col28a1Q2UY11 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 40.9 ms