Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 6230400D17Rik-201ENSMUST00000180987 1554 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Col18a1P39061 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col18a1P39061 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Col18a1P39061 Gm13888-201ENSMUST00000119148 422 ntBASIC17.64■□□□□ 0.41
Col18a1P39061 Nudt6-207ENSMUST00000141438 899 ntTSL 2 BASIC17.64■□□□□ 0.41
Col18a1P39061 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC17.64■□□□□ 0.41
Col18a1P39061 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col18a1P39061 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Col18a1P39061 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC17.64■□□□□ 0.41
Col18a1P39061 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col18a1P39061 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col18a1P39061 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col18a1P39061 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col18a1P39061 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col18a1P39061 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC17.64■□□□□ 0.41
Col18a1P39061 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC17.64■□□□□ 0.41
Col18a1P39061 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col18a1P39061 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col18a1P39061 Tmem190-201ENSMUST00000013235 589 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col18a1P39061 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Col18a1P39061 Gm11815-201ENSMUST00000139423 708 ntTSL 5 BASIC17.63■□□□□ 0.41
Col18a1P39061 Rmrp-201ENSMUST00000157463 271 ntBASIC17.63■□□□□ 0.41
Col18a1P39061 Gm15852-201ENSMUST00000159701 915 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Col18a1P39061 Gm13522-202ENSMUST00000209682 997 ntTSL 5 BASIC17.63■□□□□ 0.41
Col18a1P39061 Gm45925-201ENSMUST00000218882 744 ntBASIC17.63■□□□□ 0.41
Col18a1P39061 AL732506.1-201ENSMUST00000226420 281 ntBASIC17.63■□□□□ 0.41
Col18a1P39061 Gm25517-201ENSMUST00000083865 134 ntBASIC17.63■□□□□ 0.41
Col18a1P39061 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col18a1P39061 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Col18a1P39061 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col18a1P39061 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col18a1P39061 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Col18a1P39061 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Col18a1P39061 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col18a1P39061 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col18a1P39061 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col18a1P39061 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col18a1P39061 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col18a1P39061 Tmed9-203ENSMUST00000224741 1450 ntBASIC17.63■□□□□ 0.41
Col18a1P39061 Ssc4d-202ENSMUST00000111150 459 ntTSL 2 BASIC17.63■□□□□ 0.41
Col18a1P39061 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC17.63■□□□□ 0.41
Col18a1P39061 B230119M05Rik-201ENSMUST00000154072 979 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Col18a1P39061 Coa3-202ENSMUST00000168089 291 ntTSL 3 BASIC17.63■□□□□ 0.41
Col18a1P39061 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col18a1P39061 Cyb561-206ENSMUST00000184086 1130 ntTSL 5 BASIC17.63■□□□□ 0.41
Col18a1P39061 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC17.63■□□□□ 0.41
Col18a1P39061 AC108416.1-202ENSMUST00000228927 1201 ntBASIC17.63■□□□□ 0.41
Col18a1P39061 Gm6781-201ENSMUST00000038304 1242 ntBASIC17.63■□□□□ 0.41
Col18a1P39061 Gm37305-201ENSMUST00000195714 4279 ntBASIC17.63■□□□□ 0.41
Col18a1P39061 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col18a1P39061 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col18a1P39061 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col18a1P39061 Adgrv1-206ENSMUST00000128120 1591 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Col18a1P39061 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col18a1P39061 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col18a1P39061 Gm10584-201ENSMUST00000207036 2628 ntBASIC17.62■□□□□ 0.41
Col18a1P39061 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC17.62■□□□□ 0.41
Col18a1P39061 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col18a1P39061 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col18a1P39061 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col18a1P39061 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col18a1P39061 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col18a1P39061 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col18a1P39061 Sec11a-204ENSMUST00000120285 875 ntTSL 3 BASIC17.62■□□□□ 0.41
Col18a1P39061 Gm12291-201ENSMUST00000121627 311 ntBASIC17.62■□□□□ 0.41
Col18a1P39061 Tbc1d22bos-201ENSMUST00000159875 826 ntTSL 3 BASIC17.62■□□□□ 0.41
Col18a1P39061 AC159103.1-201ENSMUST00000228325 429 ntBASIC17.62■□□□□ 0.41
Col18a1P39061 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col18a1P39061 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col18a1P39061 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Col18a1P39061 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Col18a1P39061 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col18a1P39061 Crem-233ENSMUST00000154135 2530 ntTSL 5 BASIC17.62■□□□□ 0.41
Col18a1P39061 Gm43509-201ENSMUST00000196551 2594 ntBASIC17.62■□□□□ 0.41
Col18a1P39061 Srsf5-202ENSMUST00000110351 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col18a1P39061 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
Col18a1P39061 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col18a1P39061 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col18a1P39061 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Col18a1P39061 Gm13035-201ENSMUST00000117496 342 ntBASIC17.61■□□□□ 0.41
Col18a1P39061 Gm12795-201ENSMUST00000117594 539 ntBASIC17.61■□□□□ 0.41
Col18a1P39061 Gm14460-201ENSMUST00000121511 639 ntBASIC17.61■□□□□ 0.41
Col18a1P39061 Hsh2d-202ENSMUST00000165324 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col18a1P39061 Scgb1b19-201ENSMUST00000165813 418 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Col18a1P39061 Scgb1b3-201ENSMUST00000179481 419 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col18a1P39061 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Col18a1P39061 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Col18a1P39061 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Col18a1P39061 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC17.61■□□□□ 0.41
Col18a1P39061 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col18a1P39061 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Col18a1P39061 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col18a1P39061 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Col18a1P39061 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col18a1P39061 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col18a1P39061 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col18a1P39061 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC17.61■□□□□ 0.41
Col18a1P39061 Ldha-ps2-201ENSMUST00000118722 1057 ntBASIC17.61■□□□□ 0.41
Col18a1P39061 Gm14199-201ENSMUST00000130021 495 ntTSL 2 BASIC17.61■□□□□ 0.41
Col18a1P39061 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms