Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trim56Q80VI1 Gm8463-201ENSMUST00000208573 613 ntBASIC16.1■□□□□ 0.17
Trim56Q80VI1 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim56Q80VI1 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim56Q80VI1 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim56Q80VI1 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim56Q80VI1 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim56Q80VI1 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim56Q80VI1 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim56Q80VI1 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim56Q80VI1 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim56Q80VI1 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim56Q80VI1 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim56Q80VI1 Gm7899-201ENSMUST00000192935 1897 ntBASIC16.1■□□□□ 0.17
Trim56Q80VI1 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Trim56Q80VI1 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim56Q80VI1 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trim56Q80VI1 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim56Q80VI1 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim56Q80VI1 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC16.09■□□□□ 0.17
Trim56Q80VI1 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim56Q80VI1 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim56Q80VI1 Gm14752-201ENSMUST00000120719 2075 ntBASIC16.09■□□□□ 0.17
Trim56Q80VI1 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Trim56Q80VI1 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim56Q80VI1 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim56Q80VI1 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim56Q80VI1 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
Trim56Q80VI1 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim56Q80VI1 Gm13886-201ENSMUST00000117876 1183 ntBASIC16.09■□□□□ 0.17
Trim56Q80VI1 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim56Q80VI1 Gm12960-201ENSMUST00000120017 1066 ntBASIC16.09■□□□□ 0.17
Trim56Q80VI1 AC073947.2-201ENSMUST00000215888 1130 ntBASIC16.09■□□□□ 0.17
Trim56Q80VI1 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim56Q80VI1 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Trim56Q80VI1 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Trim56Q80VI1 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Trim56Q80VI1 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Trim56Q80VI1 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC16.09■□□□□ 0.17
Trim56Q80VI1 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim56Q80VI1 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim56Q80VI1 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim56Q80VI1 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Trim56Q80VI1 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Trim56Q80VI1 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim56Q80VI1 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
Trim56Q80VI1 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Trim56Q80VI1 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim56Q80VI1 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Trim56Q80VI1 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Trim56Q80VI1 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
Trim56Q80VI1 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Trim56Q80VI1 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
Trim56Q80VI1 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
Trim56Q80VI1 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
Trim56Q80VI1 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.17
Trim56Q80VI1 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
Trim56Q80VI1 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.16
Trim56Q80VI1 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
Trim56Q80VI1 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Trim56Q80VI1 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Trim56Q80VI1 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC16.08■□□□□ 0.16
Trim56Q80VI1 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Trim56Q80VI1 Gm38223-201ENSMUST00000194484 695 ntBASIC16.08■□□□□ 0.16
Trim56Q80VI1 Gm5276-201ENSMUST00000196683 1047 ntBASIC16.08■□□□□ 0.16
Trim56Q80VI1 Gm6983-201ENSMUST00000214912 628 ntBASIC16.08■□□□□ 0.16
Trim56Q80VI1 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC16.08■□□□□ 0.16
Trim56Q80VI1 Gm13730-201ENSMUST00000121036 1462 ntBASIC16.08■□□□□ 0.16
Trim56Q80VI1 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim56Q80VI1 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim56Q80VI1 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim56Q80VI1 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim56Q80VI1 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC16.08■□□□□ 0.16
Trim56Q80VI1 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Trim56Q80VI1 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Trim56Q80VI1 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Trim56Q80VI1 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim56Q80VI1 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim56Q80VI1 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
Trim56Q80VI1 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim56Q80VI1 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim56Q80VI1 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim56Q80VI1 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC16.07■□□□□ 0.16
Trim56Q80VI1 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC16.07■□□□□ 0.16
Trim56Q80VI1 Ighv5-13-201ENSMUST00000193550 290 ntBASIC16.07■□□□□ 0.16
Trim56Q80VI1 Gm42550-201ENSMUST00000201553 960 ntBASIC16.07■□□□□ 0.16
Trim56Q80VI1 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim56Q80VI1 Gm8775-201ENSMUST00000170943 1327 ntBASIC16.07■□□□□ 0.16
Trim56Q80VI1 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
Trim56Q80VI1 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC16.07■□□□□ 0.16
Trim56Q80VI1 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim56Q80VI1 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim56Q80VI1 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Trim56Q80VI1 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim56Q80VI1 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Trim56Q80VI1 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim56Q80VI1 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim56Q80VI1 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim56Q80VI1 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Trim56Q80VI1 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 55.5 ms