Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Limch1Q3UH68 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Limch1Q3UH68 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Limch1Q3UH68 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Limch1Q3UH68 Gm9115-201ENSMUST00000120192 1348 ntBASIC16.1■□□□□ 0.17
Limch1Q3UH68 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Limch1Q3UH68 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Limch1Q3UH68 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Limch1Q3UH68 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Limch1Q3UH68 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Limch1Q3UH68 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Limch1Q3UH68 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Limch1Q3UH68 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Limch1Q3UH68 Gm18244-201ENSMUST00000219747 1566 ntBASIC16.09■□□□□ 0.17
Limch1Q3UH68 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
Limch1Q3UH68 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC16.09■□□□□ 0.17
Limch1Q3UH68 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Limch1Q3UH68 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Limch1Q3UH68 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Limch1Q3UH68 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Limch1Q3UH68 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Limch1Q3UH68 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
Limch1Q3UH68 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Limch1Q3UH68 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Limch1Q3UH68 Mir698-201ENSMUST00000102164 109 ntBASIC16.09■□□□□ 0.17
Limch1Q3UH68 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Limch1Q3UH68 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC16.09■□□□□ 0.17
Limch1Q3UH68 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC16.09■□□□□ 0.17
Limch1Q3UH68 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
Limch1Q3UH68 Gm44719-201ENSMUST00000206404 149 ntBASIC16.09■□□□□ 0.17
Limch1Q3UH68 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Limch1Q3UH68 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Limch1Q3UH68 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Limch1Q3UH68 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Limch1Q3UH68 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Limch1Q3UH68 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Limch1Q3UH68 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Limch1Q3UH68 Gm10729-202ENSMUST00000193403 1375 ntBASIC16.09■□□□□ 0.17
Limch1Q3UH68 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Limch1Q3UH68 Gm14752-201ENSMUST00000120719 2075 ntBASIC16.09■□□□□ 0.17
Limch1Q3UH68 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Limch1Q3UH68 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Limch1Q3UH68 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Limch1Q3UH68 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Limch1Q3UH68 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Limch1Q3UH68 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Limch1Q3UH68 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Limch1Q3UH68 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Limch1Q3UH68 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Limch1Q3UH68 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Limch1Q3UH68 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
Limch1Q3UH68 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Limch1Q3UH68 Gm37917-201ENSMUST00000194711 392 ntBASIC16.08■□□□□ 0.16
Limch1Q3UH68 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Limch1Q3UH68 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Limch1Q3UH68 Gm9797-201ENSMUST00000052902 613 ntBASIC16.08■□□□□ 0.16
Limch1Q3UH68 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Limch1Q3UH68 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Limch1Q3UH68 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Limch1Q3UH68 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Limch1Q3UH68 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Limch1Q3UH68 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Limch1Q3UH68 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Limch1Q3UH68 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Limch1Q3UH68 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Limch1Q3UH68 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Limch1Q3UH68 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Limch1Q3UH68 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Limch1Q3UH68 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC16.08■□□□□ 0.16
Limch1Q3UH68 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC16.08■□□□□ 0.16
Limch1Q3UH68 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Limch1Q3UH68 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Limch1Q3UH68 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Limch1Q3UH68 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Limch1Q3UH68 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Limch1Q3UH68 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Limch1Q3UH68 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Limch1Q3UH68 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Limch1Q3UH68 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Limch1Q3UH68 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
Limch1Q3UH68 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Limch1Q3UH68 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Limch1Q3UH68 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC16.07■□□□□ 0.16
Limch1Q3UH68 Gm10766-202ENSMUST00000194123 606 ntBASIC16.07■□□□□ 0.16
Limch1Q3UH68 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Limch1Q3UH68 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Limch1Q3UH68 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Limch1Q3UH68 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Limch1Q3UH68 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Limch1Q3UH68 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Limch1Q3UH68 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Limch1Q3UH68 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Limch1Q3UH68 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Limch1Q3UH68 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Limch1Q3UH68 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Limch1Q3UH68 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Limch1Q3UH68 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
Limch1Q3UH68 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Limch1Q3UH68 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Limch1Q3UH68 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 64.4 ms