Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC15.06■□□□□ 0
Hmgb1P63158 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC15.06■□□□□ 0
Hmgb1P63158 Gm8927-201ENSMUST00000181978 981 ntBASIC15.06■□□□□ 0
Hmgb1P63158 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Hmgb1P63158 Gm3222-201ENSMUST00000071282 990 ntBASIC15.06■□□□□ 0
Hmgb1P63158 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC15.06■□□□□ 0
Hmgb1P63158 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Hmgb1P63158 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Hmgb1P63158 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Hmgb1P63158 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Hmgb1P63158 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Hmgb1P63158 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Hmgb1P63158 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC15.06■□□□□ 0
Hmgb1P63158 Cacna1g-203ENSMUST00000103166 8104 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Hmgb1P63158 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC15.06■□□□□ 0
Hmgb1P63158 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Hmgb1P63158 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC15.06■□□□□ 0
Hmgb1P63158 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Hmgb1P63158 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Hmgb1P63158 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC15.06■□□□□ 0
Hmgb1P63158 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC15.05■□□□□ 0
Hmgb1P63158 BC043934-202ENSMUST00000185694 2356 ntBASIC15.05■□□□□ 0
Hmgb1P63158 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Hmgb1P63158 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ 0
Hmgb1P63158 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Hmgb1P63158 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ 0
Hmgb1P63158 Gm38346-201ENSMUST00000192379 2639 ntBASIC15.05■□□□□ 0
Hmgb1P63158 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Hmgb1P63158 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
Hmgb1P63158 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Hmgb1P63158 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC15.05■□□□□ -0
Hmgb1P63158 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC15.05■□□□□ -0
Hmgb1P63158 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Hmgb1P63158 Gm12585-201ENSMUST00000117307 290 ntBASIC15.05■□□□□ -0
Hmgb1P63158 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC15.05■□□□□ -0
Hmgb1P63158 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC15.05■□□□□ -0
Hmgb1P63158 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC15.05■□□□□ -0
Hmgb1P63158 Gm18934-201ENSMUST00000216671 1044 ntBASIC15.05■□□□□ -0
Hmgb1P63158 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC15.05■□□□□ -0
Hmgb1P63158 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
Hmgb1P63158 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC15.05■□□□□ -0
Hmgb1P63158 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC15.05■□□□□ -0
Hmgb1P63158 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC15.05■□□□□ -0
Hmgb1P63158 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC15.05■□□□□ -0
Hmgb1P63158 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Hmgb1P63158 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC15.05■□□□□ -0
Hmgb1P63158 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC15.05■□□□□ -0
Hmgb1P63158 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC15.05■□□□□ -0
Hmgb1P63158 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Hmgb1P63158 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Hmgb1P63158 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Hmgb1P63158 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
Hmgb1P63158 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Hmgb1P63158 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Hmgb1P63158 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Hmgb1P63158 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
Hmgb1P63158 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb1P63158 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb1P63158 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb1P63158 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC15.04■□□□□ -0
Hmgb1P63158 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC15.04■□□□□ -0
Hmgb1P63158 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC15.04■□□□□ -0
Hmgb1P63158 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb1P63158 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb1P63158 Arid3a-201ENSMUST00000019708 5361 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb1P63158 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb1P63158 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb1P63158 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb1P63158 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Hmgb1P63158 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC15.04■□□□□ -0
Hmgb1P63158 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb1P63158 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC15.04■□□□□ -0
Hmgb1P63158 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
Hmgb1P63158 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC15.04■□□□□ -0
Hmgb1P63158 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC15.04■□□□□ -0
Hmgb1P63158 Gm27702-201ENSMUST00000184512 56 ntBASIC15.04■□□□□ -0
Hmgb1P63158 Gm10766-202ENSMUST00000194123 606 ntBASIC15.04■□□□□ -0
Hmgb1P63158 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb1P63158 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb1P63158 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb1P63158 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb1P63158 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb1P63158 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb1P63158 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb1P63158 Dolpp1-203ENSMUST00000123202 2294 ntTSL 1 (best) BASIC15.04■□□□□ -0
Hmgb1P63158 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb1P63158 Slc6a13-201ENSMUST00000064580 2234 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb1P63158 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Hmgb1P63158 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC15.04■□□□□ -0
Hmgb1P63158 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb1P63158 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb1P63158 Apobec1-201ENSMUST00000112585 2127 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb1P63158 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC15.04■□□□□ -0
Hmgb1P63158 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Hmgb1P63158 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb1P63158 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC15.04■□□□□ -0
Hmgb1P63158 Enc1-201ENSMUST00000041623 4737 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb1P63158 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
Hmgb1P63158 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Hmgb1P63158 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 58.5 ms