Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ercc3P49135 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Ercc3P49135 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ercc3P49135 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Ercc3P49135 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC16.22■□□□□ 0.19
Ercc3P49135 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ercc3P49135 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ercc3P49135 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC16.22■□□□□ 0.19
Ercc3P49135 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC16.22■□□□□ 0.19
Ercc3P49135 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Ercc3P49135 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC16.22■□□□□ 0.19
Ercc3P49135 Gm37917-201ENSMUST00000194711 392 ntBASIC16.22■□□□□ 0.19
Ercc3P49135 Gm43094-201ENSMUST00000196549 921 ntBASIC16.22■□□□□ 0.19
Ercc3P49135 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC16.22■□□□□ 0.19
Ercc3P49135 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ercc3P49135 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
Ercc3P49135 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Ercc3P49135 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ercc3P49135 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ercc3P49135 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ercc3P49135 AC154527.2-201ENSMUST00000225256 1466 ntBASIC16.22■□□□□ 0.19
Ercc3P49135 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
Ercc3P49135 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ercc3P49135 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ercc3P49135 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Ercc3P49135 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ercc3P49135 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ercc3P49135 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ercc3P49135 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Ercc3P49135 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Ercc3P49135 Gm37015-201ENSMUST00000192763 1521 ntBASIC16.21■□□□□ 0.19
Ercc3P49135 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ercc3P49135 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ercc3P49135 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC16.21■□□□□ 0.19
Ercc3P49135 Ldha-ps-201ENSMUST00000119390 995 ntBASIC16.21■□□□□ 0.19
Ercc3P49135 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC16.21■□□□□ 0.19
Ercc3P49135 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC16.21■□□□□ 0.19
Ercc3P49135 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC16.21■□□□□ 0.19
Ercc3P49135 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Ercc3P49135 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Ercc3P49135 Gm28631-201ENSMUST00000190740 334 ntBASIC16.21■□□□□ 0.19
Ercc3P49135 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Ercc3P49135 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Ercc3P49135 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Ercc3P49135 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ercc3P49135 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ercc3P49135 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Ercc3P49135 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Ercc3P49135 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ercc3P49135 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ercc3P49135 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Ercc3P49135 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC16.21■□□□□ 0.18
Ercc3P49135 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
Ercc3P49135 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Ercc3P49135 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Ercc3P49135 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
Ercc3P49135 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Ercc3P49135 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ercc3P49135 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ercc3P49135 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ercc3P49135 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ercc3P49135 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC16.2■□□□□ 0.18
Ercc3P49135 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ercc3P49135 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ercc3P49135 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ercc3P49135 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC16.2■□□□□ 0.18
Ercc3P49135 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
Ercc3P49135 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC16.2■□□□□ 0.18
Ercc3P49135 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC16.2■□□□□ 0.18
Ercc3P49135 Gm12138-201ENSMUST00000122180 951 ntBASIC16.2■□□□□ 0.18
Ercc3P49135 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ercc3P49135 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC16.2■□□□□ 0.18
Ercc3P49135 Gm18624-201ENSMUST00000220966 658 ntBASIC16.2■□□□□ 0.18
Ercc3P49135 Arhgef33-209ENSMUST00000225223 714 ntBASIC16.2■□□□□ 0.18
Ercc3P49135 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Ercc3P49135 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC16.2■□□□□ 0.18
Ercc3P49135 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ercc3P49135 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ercc3P49135 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Ercc3P49135 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Ercc3P49135 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Ercc3P49135 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ercc3P49135 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ercc3P49135 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ercc3P49135 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Ercc3P49135 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Ercc3P49135 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Ercc3P49135 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ercc3P49135 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC16.19■□□□□ 0.18
Ercc3P49135 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ercc3P49135 Rubie-203ENSMUST00000227803 2430 ntBASIC16.19■□□□□ 0.18
Ercc3P49135 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC16.19■□□□□ 0.18
Ercc3P49135 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Ercc3P49135 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ercc3P49135 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ercc3P49135 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ercc3P49135 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ercc3P49135 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC16.19■□□□□ 0.18
Ercc3P49135 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Ercc3P49135 Gm42872-201ENSMUST00000200026 1967 ntBASIC16.19■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms